Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq9360 104 2e-17 >seq9360 Length=410125 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | || ||||| | |||||||| || || ||||| || ||| Sbjct 230819 TGGCCACCCCGCAGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 230760 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 || |||| ||||| | ||| || |||||| |||| ||||| || ||||||||| Sbjct 230759 GACAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGA 230700 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || ||||| || || ||| |||| | || | | || | || |||| || ||| Sbjct 230699 GGGATTCCTTCCTTATC-TTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTC 230641 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||||| | || | |||||||| |||| || || || || || ||||| Sbjct 230640 CACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495952385600000