Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq10494 122 1e-22 seq10358 96.9 5e-15 >seq10494 Length=32657 Score = 122 bits (134), Expect = 1e-22 Identities = 326/489 (67%), Gaps = 21/489 (4%) Strand=Plus/Minus Query 79065 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTC 79124 ||| |||||||| | |||||| | ||||| ||||| |||||| || || | | || Sbjct 5049 AAACTCTCCAGAAAGTACTCTTCTGGTGTAGATATTGGAGGTATAAGGCTCAAAGCACTC 4990 Query 79125 ATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATT 79184 ||| ||||| | || || || ||||| |||||||| || |||| ||| || ||| Sbjct 4989 ATTGTTTCCAAGTATCTGGCTGGTAGATGCTGTTGGCATTGGAGCCAACAACAAGGAATT 4930 Query 79185 TCTAAGACCGTATGATCTGATT---TTATCTTTTAGAGATTCCCAATCCCAAAGATCAGA 79241 ||| | || ||| | | ||| || ||| | |||| ||||| ||||||||| | || Sbjct 4929 TCTCACCCC--ATGTT-TAATTACCTTTTCTCTGAGAGCCTCCCAGTCCCAAAGACCTGA 4873 Query 79242 --CGGGAC-AACATTCCAAAGATCATATTGTAGAATA--CCGTT---ACTAG-CGTATGA 79292 | ||| |||| ||| | ||| |||| |||| || || | ||| || | Sbjct 4872 ATCTGGAGTAACACCCCACATATCGAATTG--GAATTGGCCTTTCGAAATAGGCGAACCC 4815 Query 79293 TCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGC 79352 ||| | ||||| || | || || | | |||| ||| | || || | || Sbjct 4814 TCCC----AAGTTTCGTAGGTACCCTCTTCTATTGCTAGTTCCATAGAGGCTTCCATTGA 4759 Query 79353 TCCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAA 79412 || |||| ||||| || ||||| | ||| || || | ||| || | || ||||| Sbjct 4758 GGCGAAATAGATGGTCTCAAAAATGTCCTTGTTCAGTTTTTGAGCCGGTTCACTGTCAAA 4699 Query 79413 TGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 79472 ||| || | | || || |||||||| || ||||||| ||||||||| |||||||| Sbjct 4698 TGGCATCTTCATCATTATGAAGGCGTCTGCCAAACCTTGAATACCAATACCTATAGGTCT 4639 Query 79473 ATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 79532 ||| | |||||| | || ||||| || | ||||| ||||| | || || ||||| Sbjct 4638 ATGACGCTTATTGCTTTTCTCGGCTTCAGGTACCGGATAGTAATTTACGTCGATGATTTT 4579 Query 79533 ATTGAGATT 79541 ||||| || Sbjct 4578 GTTGAGGTT 4570 >seq10358 Length=34033 Score = 96.9 bits (106), Expect = 5e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 49946 GTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGT 50005 |||| |||| | || || || || |||||| ||||| || | || || |||| Sbjct 94 GTTTGTACATGAGGCAGGCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGT 153 Query 50006 TGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG 50065 || || || || || ||||| ||||| ||||| || ||||| || || || ||||| | Sbjct 154 TGCTGAAAGTCAGACCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAG 213 Query 50066 ACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGG 50125 | || || ||||| || || || ||||||||||| || || | |||||| | ||||||| Sbjct 214 ATCCCGAGAAGAAAATCCCCTCCACTGCGGCAAACGCCACTATTCTCTCCGCGTAACTGG 273 Query 50126 C 50126 | Sbjct 274 C 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718107189520000