Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1448 129 9e-25 seq10358 125 1e-23 seq9774 104 3e-17 seq16236 102 1e-16 seq15668 102 1e-16 seq10604 87.8 3e-12 >seq1448 Length=175156 Score = 129 bits (142), Expect = 9e-25 Identities = 124/159 (78%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 ||||| || ||| | ||||| || |||||||| ||||| || ||||| |||||| |||| Sbjct 97903 TACGCGGAGAGAATAGTGGCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTTT 97844 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 || | || || ||||| |||||||| || |||||||| || ||||| || |||||| Sbjct 97843 GCCTCAATTTTCTGGCTGAAGAAGCGAGGCCTCATGCCGGGTCTGACTTTTAGCAACGAG 97784 Query 125535 TTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || || || ||||||||||| ||| |||||||||| Sbjct 97783 CTCATCTCCCGTGACGAGGGCCTGCACACTGACTTTGCC 97745 >seq10358 Length=34033 Score = 125 bits (138), Expect = 1e-23 Identities = 123/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 125415 TACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTT 125474 ||||| || ||| | ||||| || ||||| || ||||| || ||||| ||||| |||| Sbjct 268 TACGCGGAGAGAATAGTGGCGTTTGCCGCAGTGGAGGGGATTTTCTTCTCGGGATCTTTT 209 Query 125475 GCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 || | || || ||||| ||||||||||| |||||||| || ||||| ||| |||||| Sbjct 208 GCTTCGATTTTCTGGCTGAAGAAGCGCGGCCTCATGCCGGGTCTGACTTTCAGCAACGAG 149 Query 125535 TTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCC 125573 | || || || || |||||||| ||| |||||||||| Sbjct 148 CTCATCTCACGTGATGAGGGCCTGCACACTGACTTTGCC 110 >seq9774 Length=82367 Score = 104 bits (114), Expect = 3e-17 Identities = 168/242 (69%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 70172 ATCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAAT 70231 |||||||| | ||||||| ||||| ||||| | | | | ||| | ||||| Sbjct 81141 ATCATTGAAAGAATCAAGACAAATCCCACAGACCGCCGTTTGATTTTGTCTGCTTGGAAC 81082 Query 70232 CCTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCG 70291 || || || | | |||||||||| || || || || || ||| |||||||||| Sbjct 81081 CCAGCTGACATCCCTGAAATGGCACTGCCTCCCTGCCATTGCTTGTGTCAGTTTTACGTT 81022 Query 70292 TACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTA 70351 | ||||| | ||||| || |||| ||| | ||| |||||| ||||||| || Sbjct 81021 GCCAATGGCGAGTTGTCTTGTCAGCTGTACCAGCGATCTGCTGACATGAGCCTCGGCGTG 80962 Query 70352 CCCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTG 70411 || |||||||| || |||||| || || | || |||||||||||| | |||||||| Sbjct 80961 CCATTTAACATCGCCAGCTATGCTCTGCTCACCTGCATGATTGCTCAGGTCACCGGCCTT 80902 Query 70412 AA 70413 || Sbjct 80901 AA 80900 >seq16236 Length=166078 Score = 102 bits (112), Expect = 1e-16 Identities = 167/241 (69%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 70173 TCATTGACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATC 70232 ||||||| | ||||||| ||||| ||||| | | | | ||| | ||||| | Sbjct 14718 TCATTGAAAGAATCAAGACAAATCCCACAGACCGCCGTTTGATTTTGTCTGCTTGGAACC 14777 Query 70233 CTGCAGATTTGCACCAAATGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGT 70292 | || || | | |||||||||| || || || || || ||| |||||||||| Sbjct 14778 CAGCTGACATCCCTGAAATGGCACTGCCTCCCTGCCATTGCTTGTGTCAGTTTTACGTTG 14837 Query 70293 ACGATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTAC 70352 | ||||| | |||| || |||| ||| | ||| ||||||||||||||||| | Sbjct 14838 CCAATGGCGAGCTGTCTTGTCAGCTGTACCAGCGATCTGCTGACATGGGCCTCGGTGTGC 14897 Query 70353 CCTTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGA 70412 | |||||||| || |||||| || || | || |||||| ||||| | |||||||| | Sbjct 14898 CATTTAACATCGCCAGCTATGCTCTGCTCACCTGCATGATCGCTCAGGTCACCGGCCTTA 14957 Query 70413 A 70413 | Sbjct 14958 A 14958 >seq15668 Length=647317 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 97201 CTCAGGTAGAGACTGGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCA 97260 ||||||| ||||| || || |||||||| |||||||| || || || ||||| || | Sbjct 303554 CTCAGGTCGAGACAGGCACGCCGTACATGCTCTACAAAGACGCCTGCAACCGCAAGAGTA 303495 Query 97261 ACCAACGCCACTTGGGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACG 97320 |||| | || | |||||||||||| |||| || ||||||||||| || || ||||| Sbjct 303494 ACCAGCAAAACCTCGGCACCATCAAGTGCTCAAACCTGTGCACGGAGATCGTCCAGTACT 303435 Query 97321 CCTCTCCGGACGAG 97334 | |||| |||||| Sbjct 303434 CTTCTCTTGACGAG 303421 >seq10604 Length=331888 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 192354 TGCAAGTCCATAGAGGTGGCCTTTAAAAAGTTTCCCAATGGCATGATGTGCGAGTACAAG 192413 ||||||||| | || | |||||||| | ||||| |||||| | |||| |||| Sbjct 50803 TGCAAGTCCGTTGAAGATGCCTTTAAGCGCTGCCCCAACGGCATGTATTCCGAGATCAAG 50744 Query 192414 TACGACGGTGAACGAGTCCAGATACACAAGAGTCGCTCAGATTTCAAGTACTATTCTCGC 192473 || ||||| || ||||| ||| | ||||||| |||| || |||||||||| |||||| Sbjct 50743 TATGACGGAGAGCGAGTACAGCTTCACAAGACGGGCTCCGAGTTCAAGTACTTCTCTCGC 50684 Query 192474 TCACTGAA 192481 ||||| || Sbjct 50683 TCACTAAA 50676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740892461680000