Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_004629.1 Length=280334 Score E Sequences producing significant alignments: (Bits) Value seq17275 93.3 8e-14 seq2224 89.7 9e-13 >seq17275 Length=1104 Score = 93.3 bits (102), Expect = 8e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 271732 TTTAGAATATGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTT 271791 || || || ||||||| ||||||||||||||||||||||| ||||||||||| | Sbjct 617 TTCAGTATTTGGCTCCCCGACCTGGACTCGAACCAGGGACCTGAGGATTAACAGTCCGTC 676 Query 271792 GCTCTACCGACTGAGCTATCACGGAA 271817 |||||||||||||||||||| |||| Sbjct 677 GCTCTACCGACTGAGCTATCGGGGAA 702 >seq2224 Length=1872321 Score = 89.7 bits (98), Expect = 9e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||| ||||||||||||||| | ||||||||||| ||||||||| Sbjct 1840831 TGGCTCCTCGACCTGGGCTCGAACCAGGGACCTACGGATTAACAGTCCGGCGCTCTACCG 1840772 Query 271801 ACTGAGCTATCACGGAATT 271819 ||||||||||| |||||| Sbjct 1840771 ACTGAGCTATCGAGGAATT 1840753 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 271741 TGGCTCCGTGACCTGGACTCGAACCAGGGACCCAGTGATTAACAGTCACTTGCTCTACCG 271800 ||||||| ||||||| ||||||||||||||| | ||||||||||| ||||||||| Sbjct 1840723 TGGCTCCCCGACCTGGGCTCGAACCAGGGACCTACGGATTAACAGTCCGGCGCTCTACCG 1840664 Query 271801 ACTGAGCTATCACGGAA 271817 ||||||||||| |||| Sbjct 1840663 ACTGAGCTATCGGGGAA 1840647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896738988320000