Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq9661 84.2 2e-11 >seq9661 Length=48700 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || ||||| || || ||||| |||||||| ||| || ||| |||| || Sbjct 31837 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCC 31896 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 || || || ||||| | || | ||| ||||||||| || || ||||| || || | Sbjct 31897 AACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGA 31956 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| || | || |||||||| || || || ||||||||||| || Sbjct 31957 ATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTCTTG 32016 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || || || || ||||| Sbjct 32017 CCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362099746938000