Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq16548 134 5e-27 >seq16548 Length=1313 Score = 134 bits (148), Expect = 5e-27 Identities = 442/676 (65%), Gaps = 27/676 (4%) Strand=Plus/Plus Query 52858 GGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATCAGAGTGGCCAG 52917 ||| || || || || || |||||||| |||||| || ||| | || ||||| | Sbjct 560 GGTCTATGGCGTTCGCAAGGTCTGGCGGCAGTTGCACCGCGAACGGATGGCGGTGGCGCG 619 Query 52918 ATGCACTGTGGCACGTCTCATG-GCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAA 52976 ||||| || || || || ||| || | |||| || ||| || | || || || | Sbjct 620 CTGCACGGTCGCCCGACTGATGCGCCGCG-TGGGGCTGCGCGGCGTGGTGCGCGGCAAGA 678 Query 52977 AGGTCCGTACGACCATCAGCCGG---AAAGC-CGTTGCCGCAGGCGACCGCGTAAACCGT 53032 || || ||||| |||||| | || || | |||| || || | ||| | || Sbjct 679 CCGTGCGGACGACGCTCAGCCAGCCGAATGCGCCGTGCCCTAGA-GATCACGTCCAGCGC 737 Query 53033 CAGTTCGTGGCAGAACGACCTGACCAGCTGTGGGTGGCTGATTTTACTTACGTCAGCACA 53092 |||||| ||| || || || ||||||||||||| ||| || ||||||||| || Sbjct 738 CAGTTCCGGGCGGATCGGCCGAACCAGCTGTGGGTCAGTGACTTCACTTACGTCTCGACC 797 Query 53093 TGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATTGTGGGG 53152 | || ||||| | ||| || || ||| |||| ||||| | |||| | || || || Sbjct 798 TATCAAGGCTTTGCCTACGTCGCCTTCGTCATCGATGTCTATGCCCGCCGGATCGTCGGC 857 Query 53153 TGGCGGGTCT---CATCGTCCATGGAGACGACATTCGTGCTGGATGCACTGGAGCAGGCG 53209 |||||| || | ||| || || |||| |||||||| ||||| |||||||||||| Sbjct 858 TGGCGGTCCTCGACCTCGGCC--CGAACCGAC-TTCGTGCTCGATGCGCTGGAGCAGGCG 914 Query 53210 TTATGGGCCCG--------TCGAC--CGTCCGGCACGGTCCATCACAGTGATAAAGGTTC 53259 | | ||||| ||| | || ||||| | | || ||||| || ||||| Sbjct 915 CTGTATGCCCGCAAGCCTTTCGGCGGCGACCGGC-TGATTCACCACAGCGACCGCGGTTC 973 Query 53260 TCAGTATGTATCGCTGGCCTACACACAGCGGCTTAAGGAAGCCGGATTACTGGCATCAAC 53319 || ||||| | | ||||| |||||||| ||| || || | | | || Sbjct 974 GCAATATGTTGGGATTCGGTACACCGAGCGGCTTGCGGAGGCTGGCCTGGAGCCTTCTGT 1033 Query 53320 AGGAAGTACAGGCGACTCGTATGACAACGCGATGGCGGAGAGCATCAATGGTCTTTACAA 53379 || || |||||||| || |||||||| |||| ||| |||| || || ||||| Sbjct 1034 CGGTAGCGTCGGCGACTCCTACGACAACGCCCTGGCCGAGTCGATCATCGGCCTCTACAA 1093 Query 53380 AGCGGAGGTAATACA---CCGTAAGAGCTGGAAAAACCGTGCAGAAGTGGAACTGGCCAC 53436 || ||||| || || ||| | | |||| || || || || || |||||| Sbjct 1094 GGCCGAGGTCATTCACCGCCGGACGTCCTGGCCGCGCCATGACGACGTCGAGTGGGCCAC 1153 Query 53437 ACTCACGTGGGTGGACTGGTATAACAATCGACGATTGCTGGAAAGGCTGGGCCACACTCC 53496 || | ||||| ||||||| ||| | || ||| |||| ||| | ||| ||| || Sbjct 1154 GCTGAACTGGGTCGACTGGTTCAACCACCGCCGACTGCTCGAACCCATCGGCAACATCCC 1213 Query 53497 TCCGGCAGAAGCAGAA 53512 || || ||||| ||| Sbjct 1214 GCCCGCCGAAGCGGAA 1229 Score = 102 bits (112), Expect = 3e-17 Identities = 442/686 (64%), Gaps = 25/686 (4%) Strand=Plus/Plus Query 50007 GAAAATCACCAGGTATACGGTGTGCGTAAAGTCTGGCGTCAGTTGTTACGGGAAGGTATC 50066 || ||| || ||| || || || || || |||||||| |||||| || ||| | || Sbjct 549 GAGAATTTCCGGGTCTATGGCGTTCGCAAGGTCTGGCGGCAGTTGCACCGCGAACGGATG 608 Query 50067 AGAGTGGCCAGATGCACTGTGGCACGTCTCATG-GCAGTTATGGGACTTGCCGGTGTTCT 50125 ||||| | ||||| || || || || ||| || | |||| || ||| || | Sbjct 609 GCGGTGGCGCGCTGCACGGTCGCCCGACTGATGCGCCGCG-TGGGGCTGCGCGGCGTGGT 667 Query 50126 CCGGGGTAAAAAGGTCCGCACTACCGTCAGCCGG---AAAGC-CGTTGCCGCATGCGACC 50181 || || || | || || || || |||||| | || || | |||| | | || | Sbjct 668 GCGCGGCAAGACCGTGCGGACGACGCTCAGCCAGCCGAATGCGCCGTGCCCTA-GAGATC 726 Query 50182 GCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCAGTTGTGGGTGGCTGATTTTACCT 50241 ||| | || |||||| ||| || || || ||||| ||||||| ||| || || | Sbjct 727 ACGTCCAGCGCCAGTTCCGGGCGGATCGGCCGAACCAGCTGTGGGTCAGTGACTTCACTT 786 Query 50242 GGGTAAGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGAT 50301 || || | || ||||| | || || || ||| |||| ||||| | ||| | Sbjct 787 ACGTCTCGACCTATCAAGGCTTTGCCTACGTCGCCTTCGTCATCGATGTCTATGCCCGCC 846 Query 50302 ACATCGTGGGATGGCAGGTCTCATCATCCATG-GAAACAACATTCGTGCTGGATGCACTG 50360 ||||| || |||| | ||| | || ||| | || |||||||| ||||| ||| Sbjct 847 GGATCGTCGGCTGGCGGTCCTCGACCTCGGCCCGAACCGAC-TTCGTGCTCGATGCGCTG 905 Query 50361 GAGCAGGCGTTGTGGGCCCG--------TCGGC--CGTCCGGCACAATCCATCACAGTGA 50410 ||||||||| ||| ||||| ||||| || ||||| || || ||||| || Sbjct 906 GAGCAGGCGCTGTATGCCCGCAAGCCTTTCGGCGGCGACCGGC-TGATTCACCACAGCGA 964 Query 50411 TAAAGGTTCTCAGTATGTATCGCTGGCCTACACGCAGCGGCTTAAGGAAGCCGGATTACT 50470 ||||| || ||||| | | ||||| |||||||| ||| || || | Sbjct 965 CCGCGGTTCGCAATATGTTGGGATTCGGTACACCGAGCGGCTTGCGGAGGCTGGCCTGGA 1024 Query 50471 GGCATCAACAGGGAGTACTGGCGACTCGTATGACAACGCGATGGCTGAGAGCATCAATGG 50530 | | || || || |||||||| || |||||||| |||| ||| |||| || Sbjct 1025 GCCTTCTGTCGGTAGCGTCGGCGACTCCTACGACAACGCCCTGGCCGAGTCGATCATCGG 1084 Query 50531 TCTTTACAAAGCGGAGGTAATACA---CCGTAAGAGCTGGAAAAACC-GGACAGAAGTGG 50586 || ||||| || ||||| || || ||| | | |||| || ||| || || | Sbjct 1085 CCTCTACAAGGCCGAGGTCATTCACCGCCGGACGTCCTGGCCGCGCCATGAC-GACGTCG 1143 Query 50587 AACTGGCCACACTAACGTGGGTGGACTGGTATAACAATCGACGATTGCTGGAAAGGCTGG 50646 | |||||| || | ||||| ||||||| ||| | || ||| |||| ||| | | Sbjct 1144 AGTGGGCCACGCTGAACTGGGTCGACTGGTTCAACCACCGCCGACTGCTCGAACCCATCG 1203 Query 50647 GCCATATTCCTCCGGCAGAAGCAGAA 50672 || | || || || || ||||| ||| Sbjct 1204 GCAACATCCCGCCCGCCGAAGCGGAA 1229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 185214801872000