Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_004927.1 Length=75898 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 2e-14 >seq1 Length=2207822 Score = 93.3 bits (102), Expect = 2e-14 Identities = 192/280 (69%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 46990 ACTGCCTCGATGAAGTTGTCCGTCGTAGCGACCGAGATGTTGAAGTT-CGCAAACTCGCC 47048 || |||| |||||| || ||| ||||||| ||||||||||| |||||| ||||| Sbjct 722592 ACGGCCTTCATGAAGGCATCGGTCACCCCGACCGAAATGTTGAAGTTGCGCAAA-TCGCC 722534 Query 47049 CTCGTTTCGCTTCGCCACGATGAACCGACCAATATCCGGGTGGTCGGCGCGGAGAATACC 47108 || || | || || |||||| | || || || |||||| || || | || Sbjct 722533 CTGGTCT---TTGGCGTGGATGAAGGCCTCGATGTCGGGATGGTCGCAACGCAGCACCCC 722477 Query 47109 CATCTGAGCGCCACGACGCTTGCCGCCCTGCTTCACCTGATTACACGTCTCGTCAAAGAC 47168 ||| || |||||||| ||| |||| | || |||| | ||| | |||||| || Sbjct 722476 CATTTGCGCGCCACGGCGCGCGCCGGCGGACTCCACCGTCTCACAAGAGCGGTCAAACAC 722417 Query 47169 CCGCATGAAGCTCACCGGGCCGGACGC-CTCGCCACCAGTCGAATTAATGAAGGCTCCCT 47227 |||||| |||| ||||| ||||| || || | | | ||||| | |||| |||| Sbjct 722416 CCGCATATAGCTGACCGGCCCGGAGGCGCTGGACTGC-GTCGAGCCGACCCAGGCGCCCT 722358 Query 47228 TCGGTCGGAGGTGGGAGAAGGCGTACCCGACGCCACCCCC 47267 ||| |||| | ||| || |||| ||||||||||| || Sbjct 722357 GCGGGCGGATCTTGGAAAAATCGTAGCCGACGCCACCGCC 722318 Score = 93.3 bits (102), Expect = 2e-14 Identities = 192/280 (69%), Gaps = 7/280 (3%) Strand=Plus/Minus Query 46990 ACTGCCTCGATGAAGTTGTCCGTCGTAGCGACCGAGATGTTGAAGTT-CGCAAACTCGCC 47048 || |||| |||||| || ||| ||||||| ||||||||||| |||||| ||||| Sbjct 725127 ACGGCCTTCATGAAGGCATCGGTCACCCCGACCGAAATGTTGAAGTTGCGCAAA-TCGCC 725069 Query 47049 CTCGTTTCGCTTCGCCACGATGAACCGACCAATATCCGGGTGGTCGGCGCGGAGAATACC 47108 || || | || || |||||| | || || || |||||| || || | || Sbjct 725068 CTGGTCT---TTGGCGTGGATGAAGGCCTCGATGTCGGGATGGTCGCAACGCAGCACCCC 725012 Query 47109 CATCTGAGCGCCACGACGCTTGCCGCCCTGCTTCACCTGATTACACGTCTCGTCAAAGAC 47168 ||| || |||||||| ||| |||| | || |||| | ||| | |||||| || Sbjct 725011 CATTTGCGCGCCACGGCGCGCGCCGGCGGACTCCACCGTCTCACAAGAGCGGTCAAACAC 724952 Query 47169 CCGCATGAAGCTCACCGGGCCGGACGC-CTCGCCACCAGTCGAATTAATGAAGGCTCCCT 47227 |||||| |||| ||||| ||||| || || | | | ||||| | |||| |||| Sbjct 724951 CCGCATATAGCTGACCGGCCCGGAGGCGCTGGACTGC-GTCGAGCCGACCCAGGCGCCCT 724893 Query 47228 TCGGTCGGAGGTGGGAGAAGGCGTACCCGACGCCACCCCC 47267 ||| |||| | ||| || |||| ||||||||||| || Sbjct 724892 GCGGGCGGATCTTGGAAAAATCGTAGCCGACGCCACCGCC 724853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242695546982000