Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq1 96.9 4e-15 >seq1 Length=2207822 Score = 96.9 bits (106), Expect = 4e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 6938 CCGTGAGTGAGATGGCCGCCGCAGTCCAAGGACATAGCGAGAACCGAATCACCCGGCTTC 6997 ||||| || || |||||||| | ||| | ||| | | || || || || |||| | Sbjct 1508333 CCGTGGGTCAGGTGGCCGCCTTCGGCCAGGCTCATGCCCAAAATCGTGTCGCCAGGCTGC 1508274 Query 6998 AGGAGTGCTTGGTAAACTGCCTGGTTTGCTTGTGAACCGGAATGAGGTTGAACGTTTGCG 7057 || || | | | || || ||||| || || || ||||| | || || || || ||| Sbjct 1508273 AGCAGGCCGAAGAACACGGCTTGGTTGGCCTGCGAGCCGGAGTTCGGCTGCACATTGGCG 1508214 Query 7058 AAATTGCAACTAAACAGTTCTTTAGCACGCTCAATTGCCAGGTTCTCGATTTCATCGGCT 7117 |||||| || ||||| | || |||| || || ||||| | ||| | | ||| | Sbjct 1508213 AAATTGGCACCAAACAACTGCTTCACACGGTCGATGGCCAGTTGCTCAACCACGTCGACG 1508154 Query 7118 TTTACGCAGCCGCCATAATACCGTTTGCCCGGATATCCCTCAGCATACTTGTTGGT 7173 ||| ||||||| || || || || ||||| || || || ||||| ||||||||||| Sbjct 1508153 TTTTCGCAGCCACCGTAGTAGCGCTTGCCGGGGTAGCCTTCAGCGTACTTGTTGGT 1508098 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555238243280000