Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq10358 82.4 7e-11 >seq10358 Length=34033 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/153 (73%), Gaps = 4/153 (3%) Strand=Plus/Plus Query 13143 ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT--TGA 13200 |||| | || ||||| ||| ||||| || ||||| | || |||||||| ||| Sbjct 100 ACATGAGGCAGGCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGTTGCTGA 159 Query 13201 AAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACC 13260 || || ||||||||||| || || || || || | ||| || || | |||||| || || Sbjct 160 AA--GTCAGACCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAGATCC 217 Query 13261 CGaaaaaaaTATTCCTTCAACTGCTGCAAACGC 13293 ||| || || || || || ||||| |||||||| Sbjct 218 CGAGAAGAAAATCCCCTCCACTGCGGCAAACGC 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430887853236000