Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq16236 104 2e-17 seq9774 95.1 8e-15 >seq16236 Length=166078 Score = 104 bits (114), Expect = 2e-17 Identities = 121/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| || | ||| |||||| | ||||| ||| ||||||||||||||||| || Sbjct 14955 AGGCCGGTGACCTGAGCGATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGC 14896 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || |||| ||||||| | | || | |||||| |||||||| || ||||| | | | Sbjct 14895 ACACCGAGGCCCATGT-CAGCAGATCGCTGGTACAGCTGACAAGACAGCTCGCCATTGGC 14837 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 |||||||||||||||| | | ||| ||||| || || || Sbjct 14836 AACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCAT 14795 >seq9774 Length=82367 Score = 95.1 bits (104), Expect = 8e-15 Identities = 119/162 (73%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || ||||| || | ||| |||||| | ||||| ||| ||||||||||||||||| || Sbjct 80903 AGGCCGGTGACCTGAGCAATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGC 80962 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || |||| | ||||| | | || | |||||| |||||||| || | ||| | | | Sbjct 80963 ACGCCGAGGCTCATGT-CAGCAGATCGCTGGTACAGCTGACAAGACAACTCGCCATTGGC 81021 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTAT 25652 |||||||||||||||| | | ||| ||||| || || || Sbjct 81022 AACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCAT 81063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340062982314000