Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10926 86.0 3e-12 seq9448 84.2 1e-11 seq12526 82.4 4e-11 >seq10926 Length=387282 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||| |||||||||| |||| | ||||||||||||||| | Sbjct 86275 AAAAAATAATTCTGGCCCATATGGGGATCGAACCCACGACATCCGCGTTATTAGCACGGC 86334 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 86335 GCTCTAACCAACTGAGCTAACAGGCC 86360 >seq9448 Length=891376 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| | ||||||||||||||| |||||| |||||||||||||| || Sbjct 561752 GGATCGAACCCACGACATCCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACCGG 561693 Query 11528 CCGTCGACGATTGTG 11542 ||| || || |||| Sbjct 561692 CCGCTGATGACTGTG 561678 >seq12526 Length=249191 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| | ||||||||||||||| |||||| |||||||||||||| || Sbjct 236193 GGATCGAACCCACGACATCCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACCGG 236252 Query 11528 CCGT 11531 |||| Sbjct 236253 CCGT 236256 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261433835368000