Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq10870 105 6e-18 seq9360 104 2e-17 seq15668 96.9 3e-15 seq9661 93.3 4e-14 >seq10870 Length=359794 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || ||||| | ||||| | ||| || || || || ||||||||||| || Sbjct 75539 ATCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACCTTCCTT 75480 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||||||||| ||||| | | ||||||| || || |||| ||||| Sbjct 75479 GTCCTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAGGGTGAT 75420 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || || ||||| ||||||||||||||||| Sbjct 75419 GGTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 >seq9360 Length=410125 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | ||||| ||||| || | ||| || ||| || ||| ||| || Sbjct 230799 CACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTC 230740 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || ||| || || ||||||| | | || ||||| ||||| || ||||| || || | Sbjct 230739 CAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCTTG 230680 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 |||||| ||||| ||| ||| || || | | || || || | |||||||| || Sbjct 230679 AATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCTT 230620 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || ||||||||||||||||| Sbjct 230619 GCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq15668 Length=647317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || || ||||||||||||| || || || |||||||| || ||||| Sbjct 380323 ATCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCTTT 380264 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| | || || | | | ||||| || || || | ||| || Sbjct 380263 GTCTTGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTAAT 380204 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||| ||||||||||||||||||||||| Sbjct 380203 TGTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCAT 380168 >seq9661 Length=48700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| |||||||| | || || |||||||| | ||| || ||| | || ||| || Sbjct 31831 CGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGG--AAAGGGTTCGAC 31888 Query 94853 --TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTT 94910 ||||||| ||| || || ||||||| | | || || || ||||| || ||||| | Sbjct 31889 CGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCT 31948 Query 94911 TGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGA 94970 | || | ||| || ||||| ||| ||| || |||| | || || || | || | Sbjct 31949 TATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAA 32008 Query 94971 TGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| || ||||| || || ||||| ||||||||||| Sbjct 32009 TGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448190334480000