Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1636 168 1e-37 seq9338 107 3e-19 >seq1636 Length=123231 Score = 168 bits (186), Expect = 1e-37 Identities = 198/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | ||||||| | | || ||||||||||| || ||||||||||| || || Sbjct 24084 CGCCAAGAGGCATCGCAAGGTTTTACGTGATAACATCCAGGGTATCACCAAGCCCGCCAT 24025 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| ||||||||||||||||| ||||||||| | || || | | |||||||||| Sbjct 24024 TCGTCGGCTGGCTCGTCGTGGTGGCGTCAAGCGTATTTCGGGTCTCATTTATGAAGAGAC 23965 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | ||| | || | ||||| | | || |||| |||||| || ||| ||||| Sbjct 23964 TCGCGGTGTGCTCAAAGTATTCCTGGAAAATGTCATCCGTGATGCCGTCACCTACACCGA 23905 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| ||||| | ||||| ||||| |||||||| |||| || || |||| | || || Sbjct 23904 GCATGCTAAGAGGAAGACCGTCACTGCCATGGATGTCGTGTACGCTCTGAAGAGACAGGG 23845 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || ||| ||||| Sbjct 23844 CCGTACTCTCTACGGCTTCGGAGGTTAA 23817 >seq9338 Length=414812 Score = 107 bits (118), Expect = 3e-19 Identities = 122/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| | | || ||||||||||| || ||||||||||| || || Sbjct 138204 GCCAAGAGGCATCGCAAGGTTTTACGTGATAACATCCAGGGTATCACCAAGCCCGCCATT 138145 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| ||||||||||||||||| ||||||||| | || || | | ||| |||||| | Sbjct 138144 CGTCGGCTGGCTCGTCGTGGTGGCGTCAAGCGTATTTCGGGTCTCATTTATAAAGAGACT 138085 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGC 16596 |||| ||| | || | ||||| | | || || | |||||| Sbjct 138084 CGTGGTGTGCTAAAAGTATTCCTAGAAAATGTCATTCGTGATGC 138041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79058742474000