Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_006658.1 Length=30655 Score E Sequences producing significant alignments: (Bits) Value seq10460 113 9e-21 seq13114 105 1e-18 seq9391 105 1e-18 seq15836 91.5 3e-14 seq3725 82.4 1e-11 >seq10460 Length=338040 Score = 113 bits (124), Expect = 9e-21 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 3958 GTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACACTTT 4017 || ||||| ||||| ||| || ||||| ||||||||||| ||||| || || | | Sbjct 213315 GTGTTTGAGAACTTAAGAAATACCTGTTTGAAGACATACAAATTAGATCCAGCTCATTAT 213256 Query 4018 TATACAGCACCAGGTCTTTCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAACTTGAA 4077 | ||||| || ||| | || | ||| ||||||||| |||||| ||||| | || Sbjct 213255 TTCACAGCCCCGGGTTTATCCTTTGATGCTATGTTAAAGATTACTGAGATAGAATTAGAC 213196 Query 4078 CTGTTAACTGATCCTGAGATGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGTATCG 4137 || | | |||||||| ||| | || |||||||| || |||||| | ||||| || || Sbjct 213195 TTGCTGAACGATCCTGATATGATACTGTTCATTGAGAAAGGTGTTAGAGGTGGTGTTTCA 213136 Query 4138 ATGTGTGCTAATAGACATGCTGAAGCTAACAA 4169 ||| | ||| || |||||||||| || || Sbjct 213135 ATGATTTCTACAAGTTATGCTGAAGCAAATAA 213104 >seq13114 Length=764965 Score = 105 bits (116), Expect = 1e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 3954 TGATGTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACA 4013 ||| || ||||| ||||||||| || ||||| || |||||||| | ||| || || Sbjct 19579 TGAGGTGTTTGAGAACTTTAGAAATACCTGTTTGAAAACATACAAATCAGATCCAGCCCA 19638 Query 4014 CTTTTATACAGCACCAGGTCTTTCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAACT 4073 || || ||||| ||||| || || | ||| | |||||| |||||| ||||| Sbjct 19639 CTATTTCACAGCTCCAGGACTATCCTTTGATGCTCTATTAAAGATTACTGAGATAGAATA 19698 Query 4074 TGAACTGTTAACTGATCCTGAGATGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGT 4133 || || | | |||||||| ||| | || ||||||||||| || |||| || || || Sbjct 19699 AGACTTGCTGAACGATCCTGATATGATACTATTCATTGAAAAAGGCATTCGAGGCGGTGT 19758 Query 4134 ATCGATGTGTGCTAATAGACATGCTGAAGCTAACAA 4169 || ||| | |||| ||| ||||| |||| || || Sbjct 19759 TTCAATGATTTCTAAAAGATATGCTAAAGCAAATAA 19794 >seq9391 Length=56301 Score = 105 bits (116), Expect = 1e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 3954 TGATGTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACA 4013 ||| || ||||| ||||||||| || || || || |||||||| ||||| || || Sbjct 17043 TGAAGTGTTTGAGAACTTTAGAAATACCTGATTGAAAACATACAAATTAGATCCAGCCCA 17102 Query 4014 CTTTTATACAGCACCAGGTCTTTCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAACT 4073 | || ||||| |||||||| || | ||| | |||||| |||||| ||||| | Sbjct 17103 GTATTTCACAGCTCCAGGTCTATCCTTTGATGCTCTATTAAAGATTACTGAGATAGAATT 17162 Query 4074 TGAACTGTTAACTGATCCTGAGATGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGT 4133 || |||| | |||||||| ||| | || ||||||||||| || || | ||||| | Sbjct 17163 AGACTTGTTGAACGATCCTGATATGATACTATTCATTGAAAAAGGCATTAGAGGTGGCGA 17222 Query 4134 ATCGATGTGTGCTAATAGACATGCTGAAGCTAACAA 4169 || ||| | |||| ||| ||||| || | || || Sbjct 17223 TTCAATGATTTCTAAAAGATATGCTAAATCAAATAA 17258 >seq15836 Length=171272 Score = 91.5 bits (100), Expect = 3e-14 Identities = 201/297 (68%), Gaps = 6/297 (2%) Strand=Plus/Minus Query 3954 TGATGTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACA 4013 ||| || ||||| || |||||| || ||||| || |||||||| ||||| || || Sbjct 92651 TGAGGTGTTTGAGAATTTTAGAAATACCTGTTTGAAAACATACAAATTAGATCCAGCCCA 92592 Query 4014 CTTTTATACAGCACCAGGTCTTTCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAACT 4073 || || |||||| || ||||| || | ||| | ||||| |||||| || || | Sbjct 92591 CTATTTTACAGCTCCGGGTCTATCCTCTGATGCTCTATTAAATATTACTGAGATAAAATT 92532 Query 4074 TGAACTGTTAACTGATCCTGAGATGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGT 4133 || || | |||||||| ||| | || |||||||| || || ||| | ||| || Sbjct 92531 AGACTTGCCGAAAGATCCTGATATGATACTATTCATTGAGAAAGGGGTTAGAAGTGATGT 92472 Query 4134 ATCGATGTGTGCTAATAGACATGCTGAAGCTAACAACCGGTATATGGGCAAAGATTTTGA 4193 || ||| | || ||| ||||| |||| || ||| ||||| || || ||| Sbjct 92471 TTCAATGATTTCTGCAAGATATGCTCAAGCAAATAACAAATATATTCTTGAAAGTTATGA 92412 Query 4194 T--TCAAACAACCCCGAAAC-ATACCTGATGTACTATGATGTAAATAATTTGTATGG 4247 | ||||| |||| | || ||| | || || |||||||||||||| ||||| Sbjct 92411 TCATCAAA-AACCGAGTAATTATATATCAT--ACATGGATGTAAATAATTTATATGG 92358 >seq3725 Length=105599 Score = 82.4 bits (90), Expect = 1e-11 Identities = 147/216 (68%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 3954 TGATGTCTTTGAAAACTTTAGACGTAGTTGTTTCAAGACATACAATTTAGACGCACTACA 4013 ||| || ||||||||||||||| || ||||| || |||||||| ||||| || | Sbjct 78123 TGAGGTGTTTGAAAACTTTAGAAATACCTGTTTGAAAACATACAAATTAGATCCAGCCTA 78064 Query 4014 CTTTTATACAGCACCAGGTCTTTCGAACGCTGCAATGTTAAAGCATACTGAAGTAGAACT 4073 || || ||||| |||||||| || ||| | |||||| |||||| ||||| | Sbjct 78063 CTATTTCACAGCTCCAGGTCTATCATTTAATGCTCTATTAAAGATTACTGAGATAGAATT 78004 Query 4074 TGAACTGTTAACTGATCCTGAGATGCTTCTTTTCATTGAAAAGGGTGTTCGCGGTGGGGT 4133 || || | | |||||||| | |||||||| || || | | ||||| || Sbjct 78003 AGACTTGCTGAACGATCCTGA--------TATTCATTGAGAAAGGCATCAGAGGTGGTGT 77952 Query 4134 ATCGATGTGTGCTAATAGACATGCTGAAGCTAACAA 4169 || || | |||| ||| ||||| |||| || || Sbjct 77951 TTCAATTATTTCTAAAAGATATGCTAAAGCAAATAA 77916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97953457972000