Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq9457 187 4e-42 seq1 113 7e-20 >seq9457 Length=55282 Score = 187 bits (206), Expect = 4e-42 Identities = 507/769 (66%), Gaps = 39/769 (5%) Strand=Plus/Plus Query 193427 AATGAAAAAAGCATTAATAACAGGCATAACTGGGCAGGATGGATCTTATCTTGCCGAGTT 193486 |||||||||||||||||| ||||| |||| || ||||||||| | ||| | || || || Sbjct 33085 AATGAAAAAAGCATTAATTACAGGTGTAACCGGTCAGGATGGAGCCTATTTGGCAGAATT 33144 Query 193487 TCTTTTGTCTAAGGGATATGAAGTTCATGGTATTGTAAGGAGAAGTTCCCTAATCAATAC 193546 |||| | || || ||||| ||||||||||| ||| || ||| | ||||||| Sbjct 33145 TCTTCTTCAAAAAGGTTATGAGGTTCATGGTATAAAAAGAAGGGCTTCATTGTTCAATAC 33204 Query 193547 TCATAGAATTGATCAT----------ATCT-----------ATGAGAAGATCACTCTTCA 193585 | |||||||||| |||| ||| || ||| | || Sbjct 33205 CGACCGAATTGATCACCTTTACAAAGATCTTCACGAAACTAATGTAAAATTCAAATTACA 33264 Query 193586 TTATGGAGATCTAACTGATCCTGTAAATGTTATGGGTGTCATTAGGGCAGTTGAACCTGC 193645 |||||| || | | || | ||| | || || | ||| || ||| |||| | Sbjct 33265 TTATGGTGACTTGAGCGACTCCACCAATATCATTCGTATTATTCAGGAAGTAAAACCCGA 33324 Query 193646 TGAGATCTATAATCTTGGTGCTCAAAGTC--ATGTTAAAGTTTCCTTTGAGATGCCAGAG 193703 ||||| ||||| ||||| ||| | ||| | || ||||| ||||| || || Sbjct 33325 CGAGATTTATAACCTTGGGGCT--ATGTCGCACGTAAAAGTAAGTTTTGACGAACCTGAA 33382 Query 193704 TATACTTCTAATGTTGATGCTTTAGGAACTCTTAGAATACTTGAAGCAGTTCGTATGTTG 193763 ||||| ||||||| || | | || || | || || | ||||| || | ||||| Sbjct 33383 TATACCGCTAATGTGGACGGAATCGGTACATTAAGGATTTTGGAAGCTGTGAGGCTGTTG 33442 Query 193764 GGAATG-GAGAAAGATGTTCGCATCTATCAGGCATCTACCAGCGAACTGTATGGTGGTGT 193822 |||||| |||| ||| |||||| ||||| || |||||| || || || || || Sbjct 33443 GGAATGACCGAAACATG-TCGCATTTATCAAGCCTCTACCTCTGAGCTATACGGCTTAGT 33501 Query 193823 TCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGCTCTCCTTATGGTGTAGC 193882 | || || | || |||||||| |||||| ||||| | |||||||||| ||||| Sbjct 33502 ACAAGAGGTGCCGCAGTCTGAAACCACTCCATTTTATCCAAGGTCTCCTTATGCAGTAGC 33561 Query 193883 AAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCATATGGATTCCACGCTAG 193942 || || ||||| || ||||| | || ||||| || | || | | ||| | Sbjct 33562 CAAATTATATGGCTACTGGATTACAGTAAACTATCGCGAAGCTTACAACATGTATGCTTG 33621 Query 193943 TTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAGACATTTGTAACTCGTAA 194002 ||| || || ||||| |||||||| || ||||| || || || || || ||||| Sbjct 33622 CAATGGCATCCTATTCAACCACGAATCGCCTTTGAGAGGCGAAACCTTCGTGACACGTAA 33681 Query 194003 GATTACACAAG----GTTTATCTAAGATCTCTGTTGGATTACAGAAGA--TTCTTTATCT 194056 || ||| || |||| | || | | || | || | ||||| ||| | ||| Sbjct 33682 AAT--CACTAGGGCAGTTTCACAAATAGC-CT-TAGG--TCAGGAAGAATGTCTGTTTCT 33735 Query 194057 TGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTTGAAGCGATGTG 194116 ||| ||||| |||| || || || ||||| || || || || || |||| || ||||| Sbjct 33736 TGGAAATCTCGATGCCAAAAGAGACTGGGGTCATGCCAAAGACTACATTGAGGCCATGTG 33795 Query 194117 GTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACAGGT 194165 ||| || |||||||| || | | || |||||||| |||||||| ||| Sbjct 33796 GTTGATCTTGCAACAAGACGTGGCGGAAGATTATGTTATTGCTACTGGT 33844 >seq1 Length=2207822 Score = 113 bits (124), Expect = 7e-20 Identities = 261/392 (67%), Gaps = 6/392 (2%) Strand=Plus/Plus Query 193806 GAACTGTATGGTGGTGTTCTAGGCACTCCACTATCAGAAACCACACCATTTCATCCACGC 193865 |||||||| || ||||| || ||||| | |||||| ||||| || | || || Sbjct 1991542 GAACTGTACGGACTTGTTCAAGAGACTCCGCAGCGAGAAACTACACCTTTCTACCCCCGT 1991601 Query 193866 TCTCCTTATGGTGTAGCAAAGTTGTATGGTTATTGGATCATCAAGAATTATCGTGAGTCA 193925 ||||| |||| ||| || ||| ||||||| || ||||| | ||| || | || | Sbjct 1991602 TCTCCATATGCTGTTGCGAAGCTGTATGGCTACTGGATTACTGTGAACTACAGAGAAGCC 1991661 Query 193926 TATGGATTCCACGCTAGTTCTGGTATTCTCTTCAATCACGAATCTCCAAGAAGAGGTGAG 193985 |||||| | |||| | ||| || | || || |||||||| || | | || ||| Sbjct 1991662 TATGGAATGTACGCCTGCAATGGCATCTTGTTTAACCACGAATCCCCTATTCGGGGAGAG 1991721 Query 193986 ACATTTGTAACTCGTAAGATTACACAAGGTTTATCTAAGATCTCTGTTGGATTACAGAAG 194045 || ||||||||||| |||||||||| | || | ||| |||| ||||| Sbjct 1991722 ACGTTTGTAACTCGCAAGATTACACGGGCGTTGGCGCGAATCAAGCTTGGCACCCAGAAA 1991781 Query 194046 ATTCTTTATCTTGGTAATCTTAATGCTAAGAGGGATTGGGGACACGCAAAGGATTATGTT 194105 || ||| | |||||| | |||| | || |||||||| || || || ||||| Sbjct 1991782 TGCCTGTATTTGGGTAATTTGGATGCGCGACGAGACTGGGGACATGCCAAAGACTATGTC 1991841 Query 194106 GAAGCGATG---TGGTTAATGTTGCAACAGGATGAACCCGATGATTATGTGATTGCTACA 194162 || |||| ||| ||||| |||| ||||| |||| || || | || ||||| || Sbjct 1991842 GA---GATGCAATGGCTAATGCTGCAGCAGGACAAACCAGAGGACTTCGTAATTGCCACT 1991898 Query 194163 GGTGAACAGTATTCTGTTAGAGACTTTGTGAA 194194 || ||||| ||| | || |||||||| Sbjct 1991899 GGCATTCAGTACAGTGTGCGCGATTTTGTGAA 1991930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807373500080000