Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq10494 87.8 2e-12 >seq10494 Length=32657 Score = 87.8 bits (96), Expect = 2e-12 Identities = 318/492 (65%), Gaps = 27/492 (5%) Strand=Plus/Minus Query 62342 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTC 62401 ||| |||||||| | |||||| | ||||| ||||| |||||| || || | |||| Sbjct 5049 AAACTCTCCAGAAAGTACTCTTCTGGTGTAGATATTGGAGGTATAAGGCTCAAAGCACTC 4990 Query 62402 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62461 ||| ||||| | || || || ||||| || ||||| || |||| ||| || ||| Sbjct 4989 ATTGTTTCCAAGTATCTGGCTGGTAGATGCTGTTGGCATTGGAGCCAACAACAAGGAATT 4930 Query 62462 TCTAAGACCGTATGTTCTGATT---TTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62518 ||| | || ||||| | ||| || ||| | |||| ||||| | ||||||| | || Sbjct 4929 TCTCACCCC--ATGTT-TAATTACCTTTTCTCTGAGAGCCTCCCAGTCCCAAAGACCTGA 4873 Query 62519 C---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATA--CCGTT----ACTGGCGTACGA 62569 || ||| ||| |||| || || | |||| || Sbjct 4872 ATCTGGAGTAACACCCCACATATCGAATTG--GAATTGGCCTTTCGAAATAGGCGAACCC 4815 Query 62570 TCCTACATATGTATCGTATGGTCCTTCCTTCTCA-GCTAGTTCACAACTCGCCTCTAATG 62628 ||| | || ||||| | || || |||| |||||||| | || || | || Sbjct 4814 TCCCAA----GTTTCGTAGGTACCCTC-TTCTATTGCTAGTTCCATAGAGGCTTCCATTG 4760 Query 62629 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCT--TCCAGGCTATC 62686 || |||| ||||| || || || | ||| || || | ||| || | || || || Sbjct 4759 AGGCGAAATAGATGGTCTCAAAAATGTCCTTGTTCAGTTTTTGAGCCGGTTCA--CTGTC 4702 Query 62687 AAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGG 62746 |||||| || | | || || ||||| || || ||||||| ||||||||| ||||| Sbjct 4701 AAATGGCATCTTCATCATTATGAAGGCGTCTGCCAAACCTTGAATACCAATACCTATAGG 4642 Query 62747 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62806 |||||| | |||||| | || ||||| || | ||||| ||||| | || || || Sbjct 4641 TCTATGACGCTTATTGCTTTTCTCGGCTTCAGGTACCGGATAGTAATTTACGTCGATGAT 4582 Query 62807 TTTATTGAGATT 62818 ||| ||||| || Sbjct 4581 TTTGTTGAGGTT 4570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622807036880000