Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq9661 132 5e-26 seq9360 123 2e-23 seq1448 100 3e-16 seq15668 98.7 9e-16 seq10358 84.2 2e-11 >seq9661 Length=48700 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| |||||| || || || | ||| ||||||||||| |||||||| ||| Sbjct 31590 GCCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGA 31649 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || ||||||| ||||||||| || |||| | |||||| ||||| ||||| Sbjct 31650 AAGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGG 31709 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || ||| ||| ||| | | ||| | ||||| | || ||| | Sbjct 31710 GATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCAC 31769 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || || || || ||||| |||||||| Sbjct 31770 CTCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| |||||| || || || | ||| ||||||||||| |||||||| ||| Sbjct 31819 CCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAA 31878 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| | |||||| || || |||| | |||||| ||||| |||||| Sbjct 31879 AGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGG 31938 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| || || || ||| ||| | | ||| | ||||| | || ||| | Sbjct 31939 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACC 31998 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| || || || || || || ||||| |||||||| Sbjct 31999 TCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 >seq9360 Length=410125 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| ||| Sbjct 230817 GCCACCCCGCAGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 230758 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| || || | ||||||||| || |||| | |||||| || || ||||| Sbjct 230757 CAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGG 230698 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||||||| || || ||||| ||| | | ||| | ||||||| || ||| | Sbjct 230697 GATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCAC 230638 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || || || |||||||| Sbjct 230637 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq1448 Length=175156 Score = 100 bits (110), Expect = 3e-16 Identities = 124/167 (74%), Gaps = 2/167 (1%) Strand=Plus/Minus Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 || ||| ||| | || ||||| ||||| |||||||| | || || || || ||| Sbjct 97904 TTACGCGGAGAGAATAGTGGCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTT 97845 Query 46206 TGCCGCCATCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACG 46264 |||| | || || | | || || | ||| | ||||||| || ||||| |||||||||| Sbjct 97844 TGCCTCAATTTTCTGGCTGAAGAAGCGAGGCC-TCATGCCGGGTCTGACTTTTAGCAACG 97786 Query 46265 AGCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 |||| || || || |||||||||||||| || |||||||| || ||| Sbjct 97785 AGCTCATCTCCCGTGACGAGGGCCTGCACACTGACTTTGCCTGCCTC 97739 >seq15668 Length=647317 Score = 98.7 bits (108), Expect = 9e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 145669 GTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATT 145728 ||| || |||||||| | ||||| || || |||||||| || || |||||||| || Sbjct 303436 GTACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCGAGGTTTTGCTGGTT 303495 Query 145729 ACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTG 145785 ||| || | |||||| ||||| ||||||||||||||||| ||| ||||| ||||| Sbjct 303496 ACTCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCCTGTCTCGACCTG 303552 >seq10358 Length=34033 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/166 (71%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 46146 TTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTT 46205 || ||| ||| | || ||||| ||||| |||||||| | || || || || ||| Sbjct 269 TTACGCGGAGAGAATAGTGGCGTTTGCCGCAGTGGAGGGGATTTTCTTCTCGGGATCTTT 210 Query 46206 TGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGA 46265 ||| | || || | | || | ||| ||||||| || ||||| || |||||||| Sbjct 209 TGCTTCGATTTTCTGGCTGAAGAAGCGCGGCCTCATGCCGGGTCTGACTTTCAGCAACGA 150 Query 46266 GCTGATATCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTC 46311 ||| || || || || ||||||||||| || |||||||| || ||| Sbjct 149 GCTCATCTCACGTGATGAGGGCCTGCACACTGACTTTGCCTGCCTC 104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471906597120000