Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq9661 114 1e-20 seq9360 98.7 8e-16 >seq9661 Length=48700 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||||| || || || ||||||||||| ||||||||||||| Sbjct 31819 CCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAA 31878 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| |||||||||| || || || ||| | || || ||||||||||| ||| Sbjct 31879 AGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGG 31938 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || ||| | | |||||| | | | || || || |||| Sbjct 31939 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACC 31998 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||| ||||| || || ||||| || || || || ||||||||| Sbjct 31999 TCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATT 32046 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | |||||||| || || || ||||||||||| ||||||||||||| Sbjct 31591 CCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 31650 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | ||||| || || ||||| ||| | ||||| ||||||||||| ||| Sbjct 31651 AGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGG 31710 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| || || || || | | |||||| | | | || || || |||| Sbjct 31711 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACC 31770 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || || || ||||| || || || || |||||||| Sbjct 31771 TCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq9360 Length=410125 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || |||||||| || ||||||||||||| || ||| | || Sbjct 230801 AGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCT 230742 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 ||||| || ||||| ||| | ||||| |||||||| || ||| | || || || || Sbjct 230741 TCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCT 230682 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||||| |||||| | | | || ||| || |||| |||| |||||||| Sbjct 230681 TGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTC 230622 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || || ||||| || || ||||| |||||||| Sbjct 230621 TTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404999133820000