Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq11482 140 2e-28 seq9661 104 2e-17 seq9398 104 2e-17 seq5180 98.7 7e-16 seq9717 95.1 8e-15 seq11737 89.7 3e-13 seq1447 89.7 3e-13 seq12782 86.0 4e-12 seq13336 84.2 1e-11 >seq11482 Length=289922 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 14678 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 14619 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 14618 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 14584 Score = 136 bits (150), Expect = 3e-27 Identities = 87/95 (92%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||||||||||||| |||| || |||||||| Sbjct 7406 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGACAGGGACAGTGGGAATCTCGT 7347 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 7346 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 7312 Score = 105 bits (116), Expect = 4e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 5080 CTCTCTCTTCAGAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGT 5021 Query 20007 GGTAATATTTAGCCTT 20022 | ||||||||| || Sbjct 5020 TATGATATTTAGCTTT 5005 >seq9661 Length=48700 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||| ||||| || || || ||||||||| || ||||| || || Sbjct 31591 CCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 31650 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || ||||| || || || ||||| || || || ||||| |||| ||| Sbjct 31651 AGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGG 31710 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| || || || || ||||||||||| || ||||| || || Sbjct 31711 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACC 31770 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || || ||||| || || |||| ||| |||||||| |||||||| Sbjct 31771 TCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq9398 Length=56181 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||| |||||| ||| | ||| |||||||||| || |||||| | Sbjct 35992 AAGTCCGTTCCCTTGCCTGTGGGTTCACCAGAATGTAGATAGGGACAGAGGGAATCTCAT 35933 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 35932 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 35898 >seq5180 Length=100460 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| || |||||||||||||||||||| ||||||||||||| ||||||||| | Sbjct 62194 CTCTCTCTCCAGAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTCACTATCGGTCCTGT 62253 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 62254 GGATATATTTAGCCTTA 62270 >seq9717 Length=47301 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||| || |||||||||||||||||||| |||||||||||| ||||||||| | Sbjct 7647 CTCTCTCTCCAGAGTTCTTTTCAACTTTCCCTTTCGGTACTTGTTCACTATCGGTCCTGT 7706 Query 20007 GGTAATATTTAGCCTTA 20023 || ||||||||||||| Sbjct 7707 GGATATATTTAGCCTTA 7723 >seq11737 Length=277544 Score = 89.7 bits (98), Expect = 3e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||||||| ||||||| ||||||||||||||||| |||| ||||||||||| | | | || Sbjct 218927 TTCAAAGTGCTTTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCTCTCAGGAGTA 218986 Query 20014 TTTAGCCTT 20022 ||||||||| Sbjct 218987 TTTAGCCTT 218995 >seq1447 Length=1029730 Score = 89.7 bits (98), Expect = 3e-13 Identities = 61/69 (88%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 19954 TTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAATA 20013 |||||||| ||||||| ||||||||||||||||| |||| ||||||||||| | | | || Sbjct 757446 TTCAAAGTGCTTTTCACCTTTCCCTCACGGTACTAGTTCACTATCGGTCTCTCAGGAGTA 757387 Query 20014 TTTAGCCTT 20022 ||||||||| Sbjct 757386 TTTAGCCTT 757378 >seq12782 Length=242876 Score = 86.0 bits (94), Expect = 4e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 6174 AACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCC-GCGCATCTGCGC 6232 ||||| || || | || |||||||||||||||| ||||| ||||| || || || Sbjct 43348 AACGTGAACCGCAGCGTCACGGACGCGTTCTACCGTTACAAGATGCCTAAGCTGATG-GC 43290 Query 6233 CAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACATGCCTGAAGTCGC 6292 ||||| || || ||||| ||||| || || || ||||| ||||||||| || || || Sbjct 43289 TAAGGTGGAAGGCAAGGGTAACGGCATCAAGACGGTCATCGTCAACATGGTGGACGTTGC 43230 Query 6293 TAAGGCGCTCGGACGCCCTGCCACCT 6318 |||||| |||| |||| | |||| Sbjct 43229 CAAGGCGGTCGGCTGCCCGCCTACCT 43204 >seq13336 Length=709859 Score = 84.2 bits (92), Expect = 1e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTC 20002 |||||||| || |||||||||||||||||||| ||||||||||||| ||||||||| Sbjct 173435 CTCTCTCTCCAGAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTCACTATCGGTC 173380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334873720958000