Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq10494 91.5 2e-13 seq9452 82.4 1e-10 >seq10494 Length=32657 Score = 91.5 bits (100), Expect = 2e-13 Identities = 319/492 (65%), Gaps = 27/492 (5%) Strand=Plus/Minus Query 62197 AAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTC 62256 ||| |||||||| | |||||| | ||||| ||||| |||||| || || | |||| Sbjct 5049 AAACTCTCCAGAAAGTACTCTTCTGGTGTAGATATTGGAGGTATAAGGCTCAAAGCACTC 4990 Query 62257 ATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATT 62316 ||| ||||| | || || || ||||| || ||||| || |||| ||| || ||| Sbjct 4989 ATTGTTTCCAAGTATCTGGCTGGTAGATGCTGTTGGCATTGGAGCCAACAACAAGGAATT 4930 Query 62317 TCTAAGACCGTATGTTCTGATT---TTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGA 62373 ||| | || ||||| | ||| || ||| | |||| ||||| | ||||||| | || Sbjct 4929 TCTCACCCC--ATGTT-TAATTACCTTTTCTCTGAGAGCCTCCCAGTCCCAAAGACCTGA 4873 Query 62374 C---GGTACAACNNNNNNNNNNNNNNNTTGTAGAATA--CCGTT----ACTGGCGTACGA 62424 || ||| ||| |||| || || | |||| || Sbjct 4872 ATCTGGAGTAACACCCCACATATCGAATTG--GAATTGGCCTTTCGAAATAGGCGAACCC 4815 Query 62425 TCCTACATATGTATCGTATGGTCCTTCCTTCTCA-GCTAGTTCACAACTCGCCTCTAATG 62483 ||| | || ||||| | || || |||| |||||||| | || || | || Sbjct 4814 TCCCAA----GTTTCGTAGGTACCCTC-TTCTATTGCTAGTTCCATAGAGGCTTCCATTG 4760 Query 62484 CACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCT--TCCAGGCTATC 62541 || |||| ||||| || || || | ||| || || | ||| || | || || || Sbjct 4759 AGGCGAAATAGATGGTCTCAAAAATGTCCTTGTTCAGTTTTTGAGCCGGTTCA--CTGTC 4702 Query 62542 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGG 62601 |||||| || | | || || |||||||| || ||||||| ||||||||| ||||| Sbjct 4701 AAATGGCATCTTCATCATTATGAAGGCGTCTGCCAAACCTTGAATACCAATACCTATAGG 4642 Query 62602 TCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 62661 |||||| | |||||| | || ||||| || | ||||| ||||| | || || || Sbjct 4641 TCTATGACGCTTATTGCTTTTCTCGGCTTCAGGTACCGGATAGTAATTTACGTCGATGAT 4582 Query 62662 TTTATTGAGATT 62673 ||| ||||| || Sbjct 4581 TTTGTTGAGGTT 4570 >seq9452 Length=56971 Score = 82.4 bits (90), Expect = 1e-10 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 32343 TTGTCTTCTTGAGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAA 32402 |||||| | ||| | || ||| |||||| ||||| || || ||||||||||| || Sbjct 23410 TTGTCTCTATCAGAGGTTACACCCGCTTTTTGATATTCTCCAACCCGTTTTTCGAAGAAG 23351 Query 32403 TTAGTTTTACCTTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAA 32462 || ||||| |||| | ||||| |||||||| ||||| ||||||| |||| |||| Sbjct 23350 TTGGTTTTTCCTTGAAGCGATATCAAATCCATGAAGTCGAAAGGATTGGCCACATGATAA 23291 Query 32463 ATTTT 32467 | ||| Sbjct 23290 ACTTT 23286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633489432800000