Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq10870 104 2e-17 seq9661 98.7 9e-16 >seq10870 Length=359794 Score = 104 bits (114), Expect = 2e-17 Identities = 121/161 (75%), Gaps = 8/161 (5%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || ||||||| | || |||||| | ||| Sbjct 75384 ATGCAGATCTTTGTGAAGACTCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCT 75443 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||||||| ||| ||||| ||||| ||||| ||||| Sbjct 75444 GACACAATTGAAAATGTCA---AAGCAAAAATTCAG-GACAAGGAAGGTATTCCCCCTGA 75499 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATG 25155 ||||||| | |||| || || || || ||| | ||||||| Sbjct 75500 CCAACAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGATG 75540 >seq9661 Length=48700 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || | ||||| | || |||||| | || Sbjct 31817 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAGGTGGAGGCCTCG 31758 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || |||||| ||||| || ||| || || ||||| || || || |||||| Sbjct 31757 GATACCATCGAGAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCTCCCGACCAA 31698 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| |||| ||||| ||||| || ||||| |||| || || | ||| ||||| Sbjct 31697 CAGCGTCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGCCGAACCCTTTCCGACTACAAC 31638 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || ||||| || || || || || || || || Sbjct 31637 ATCCAAAAGGAGTCTACCCTCCACTTGGTACT 31606 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 |||||||| || || || ||||| |||| || || |||| || | || |||||| | Sbjct 32048 ACAATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCTTGGAGGTGGAGGCC 31989 Query 25056 TCTGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || |||||| ||||| | || | ||| || || ||||| || || || || Sbjct 31988 TCTGATACCATCGAGAACGTGAAGGCGAAGATTCAA-GATAAGGAAGGCATCCCTCCCGA 31930 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||||||||| | || ||||| || || || || || || | ||| || | ||| || Sbjct 31929 CCAACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGAACCCTTTCCGACTA 31870 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| || ||||| || || || || || || || || Sbjct 31869 CAACATCCAAAAGGAGTCAACCCTCCACTTGGTACT 31834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433232938670000