Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq10114 102 2e-16 seq13891 100 6e-16 seq13825 100 6e-16 seq11560 100 6e-16 seq14635 98.7 2e-15 seq12292 98.7 2e-15 seq9415 98.7 2e-15 seq3191 95.1 2e-14 seq9559 84.2 4e-11 >seq10114 Length=835518 Score = 102 bits (112), Expect = 2e-16 Identities = 77/88 (88%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 142490 CGGGTGGTGAG-ATA-GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGT 142547 ||| || |||| ||| |||||| |||||||||||||||||| | ||||||||||||| | Sbjct 59230 CGGCTGATGAGTATAAGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGG 59289 Query 142548 GGTCGTGGGTTCGAGCCCCACATCGGGC 142575 ||||||||||||||||||||| | |||| Sbjct 59290 GGTCGTGGGTTCGAGCCCCACGTTGGGC 59317 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 53554 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 53613 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 53614 CCCCACGTTGGGC 53626 Score = 100 bits (110), Expect = 6e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 58694 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 58753 Query 142564 CCCACATCGGGCAGA 142578 ||||| | |||| || Sbjct 58754 CCCACGTTGGGCGGA 58768 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 53015 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 53074 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 53075 CCCACGTTGGGC 53086 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 54693 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 54752 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 54753 CCCACGTTGGGC 54764 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 57535 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 57594 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 57595 CCCACGTTGGGC 57606 >seq13891 Length=681442 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 89983 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 89924 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 89923 CCCCACGTTGGGC 89911 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 91176 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 91235 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 91236 CCCCACGTTGGGC 91248 >seq13825 Length=215416 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 35417 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 35476 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 35477 CCCCACGTTGGGC 35489 >seq11560 Length=285289 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||| | ||||||||||||| | ||||||||||||||| Sbjct 188273 AGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 188332 Query 142563 CCCCACATCGGGC 142575 |||||| | |||| Sbjct 188333 CCCCACGTTGGGC 188345 >seq14635 Length=198898 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 84447 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 84388 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 84387 CCCACGTTGGGC 84376 >seq12292 Length=257813 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 232476 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 232417 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 232416 CCCACGTTGGGC 232405 >seq9415 Length=406601 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||| | ||||||||||||| | |||||||||||||||| Sbjct 171588 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 171647 Query 142564 CCCACATCGGGC 142575 ||||| | |||| Sbjct 171648 CCCACGTTGGGC 171659 >seq3191 Length=123679 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142052 TGTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGAC 142111 |||| |||||||||| |||| |||||||||||||||||||||||||| |||||||||| Sbjct 29777 TGTCCCTGTGGCGCAGTGGAAAGCGCGTTGGACTTCTAATCCAAAGGCCCCGGGTTCGAC 29836 Query 142112 CCCCGCCAGAGA 142123 ||||| ||| || Sbjct 29837 CCCCGGCAGGGA 29848 >seq9559 Length=882668 Score = 84.2 bits (92), Expect = 4e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 142053 GTCTCTGTGGCGCAATGGACAGCGCGTTGGACTTCTAATCCAAAGGTTGCGGGTTCGACC 142112 ||| | |||||||| |||| |||||||||||||||||||||||||| ||||||||||| Sbjct 521111 GTCCCGGTGGCGCAGTGGAAAGCGCGTTGGACTTCTAATCCAAAGGCCCCGGGTTCGACC 521052 Query 142113 CCCG 142116 |||| Sbjct 521051 CCCG 521048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027599755138000