Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq9661 109 5e-19 seq15668 96.9 3e-15 seq9360 95.1 1e-14 >seq9661 Length=48700 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | || || || ||||| |||||||| ||| Sbjct 31816 ATACCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCG 31875 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || ||| || || | || |||||||| ||||||||||||||||||| ||| Sbjct 31876 GAAAGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGA 31935 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| || || |||||| || | | || | ||| || | || || Sbjct 31936 GGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCC 31995 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || ||||| ||||| || || || || |||||||| Sbjct 31996 ACCTCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| || | || || || || | ||||| || ||||| |||||||| ||| Sbjct 31591 CCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAA 31650 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | || || ||| || | || || ||||| |||| |||||||||||||| ||||| Sbjct 31651 AGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGG 31710 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 |||||||| || || ||||| || | | || | ||| || | || || || Sbjct 31711 ATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACC 31770 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| ||| | || ||||| ||||| || || || || |||||||| Sbjct 31771 TCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq15668 Length=647317 Score = 96.9 bits (106), Expect = 3e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 ||||||||| || || ||||| |||| | | ||||||||| ||||||||||| ||||| Sbjct 380323 ATCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCTTT 380264 Query 114287 GTCGGCAATCTTTTGTTTTAGC-TGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCA 114345 ||| ||| ||| | |||| | | ||||| | ||| | | ||| || |||| || | Sbjct 380263 GTCTTGAAT-TTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTAA 380205 Query 114346 CCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || || |||||||| ||||| |||||||| Sbjct 380204 TTGTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCAT 380168 >seq9360 Length=410125 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| ||| || || ||| |||||| | || || ||| Sbjct 230786 GTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTGCTTGCCA 230727 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| ||||||||||| || ||||| || ||||| || || ||| || || Sbjct 230726 GCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCTTGAATTTTGGCCTTC 230667 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||| |||| || || || |||| || | || ||||| ||||| || Sbjct 230666 ACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 230607 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 230606 TTCACAAAGATCTGCAT 230590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420042233016000