Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1448 149 1e-30 seq15668 104 4e-17 seq10358 91.5 3e-13 >seq1448 Length=175156 Score = 149 bits (164), Expect = 1e-30 Identities = 133/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 42500 TGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTA 42559 ||| || ||||||||||||||||||||||| ||||| |||||| | ||||||||| |||| Sbjct 99558 TGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACATCCACTCTGAGATGTA 99499 Query 42560 CGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGC 42619 | | ||| ||||||| |||||| || ||| | ||| | | || || || || Sbjct 99498 CAGCCTCCTGATCAACACCTACATCGCCGACACCGCCCAGCAGACGCGCCTCTTTAACGC 99439 Query 42620 CATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCA 42666 ||| ||||| ||||||||||||||||||||||| |||||||| |||| Sbjct 99438 CATCGAGACCATGCCCTGCATCAAGAAGAAGGCAGACTGGGCCCTCA 99392 Score = 109 bits (120), Expect = 1e-18 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||||| | || || ||| ||||||| ||||| || ||||||||||| | || ||||| Sbjct 97897 GAGAGAATAGTGGCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTTTGCCTCA 97838 Query 42759 ATCTTCTGGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 || |||||||| ||| || ||| || ||||| || || || || ||||| ||||| Sbjct 97837 ATTTTCTGGCTGAAGAAGCGAGGCCTC-ATGCCGGGTCTGACTTTTAGCAACGAGCTCAT 97779 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 | | | |||||||| ||||| | ||||||||||||||| ||| Sbjct 97778 CTCCCGTGACGAGGGCCTGCACACTGACTTTGCCTGCCTCATGT 97735 Score = 98.7 bits (108), Expect = 2e-15 Identities = 100/125 (80%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGT 42966 ||||||| ||||||||||| |||||| |||||||||| ||| || |||||||| ||| Sbjct 97273 CATCATCCGGGAGGCCGTGGCCATCGAGCAGGAGTTCCTGACGGAGGCGCTGCCCTGTG- 97215 Query 42967 CCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCAT 43025 |||| | ||||||||| |||||||||| |||| ||||| ||| || || |||||| Sbjct 97214 CCCTCATTGGCATGAACTGCGACCTCATGAAGCAA-TACATAGAGTTTGTGGCAGACCAT 97156 Query 43026 CTCCT 43030 || || Sbjct 97155 CTGCT 97151 >seq15668 Length=647317 Score = 104 bits (114), Expect = 4e-17 Identities = 93/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 244723 GTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATT 244782 ||||||||| ||||| ||||| ||||| ||||||||||||||| |||| || || || Sbjct 303436 GTACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTGCCGAGGTTTTGCTGGTT 303495 Query 244783 GGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTG 244839 |||| |||||||||||| |||||||||||| | ||| || ||||||| ||| Sbjct 303496 ACTCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTGCCTGTCTCGACCTG 303552 Score = 84.2 bits (92), Expect = 4e-11 Identities = 89/115 (77%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 244475 ATGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG 244534 |||||| | ||||| |||||||| ||||| ||||||||||||| ||| ||| | ||||| Sbjct 302627 ATGAAGGCATCGGCAAGTCCCTGAACGCCAATGCCGATGGGTCGGTGGCGCATATTGGAC 302686 Query 244535 C-GCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTG 244588 | || | || || ||| ||||| ||||| |||| || | ||||| |||||| Sbjct 302687 CTGCGT-GCCTCTTCCACAGGGTAGTAGTTGACGTCTATGATTTTGTTAAGGTTG 302740 >seq10358 Length=34033 Score = 91.5 bits (100), Expect = 3e-13 Identities = 120/164 (73%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||||| | || || ||| |||| || ||||| || ||||||||||| | || || || Sbjct 262 GAGAGAATAGTGGCGTTTGCCGCAGTGGAGGGGATTTTCTTCTCGGGATCTTTTGCTTCG 203 Query 42759 ATCTTCTGGCTCAAGCAGAA-GGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 || |||||||| ||| || || || ||||| || || || ||| ||||| ||||| Sbjct 202 ATTTTCTGGCTGAAGAAGCGCGGCCTC-ATGCCGGGTCTGACTTTCAGCAACGAGCTCAT 144 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGT 42861 | | || ||||| ||||| | ||||||||||||||| ||| Sbjct 143 CTCACGTGATGAGGGCCTGCACACTGACTTTGCCTGCCTCATGT 100 Score = 89.7 bits (98), Expect = 1e-12 Identities = 98/125 (78%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCC-GTGT 42966 ||||||| ||||||||||| || ||| |||||||||| ||| || |||||||| ||| Sbjct 14927 CATCATCCGGGAGGCCGTGGCCATTGAGCAGGAGTTCCTGACGGAGGCGCTGCCCTGTG- 14869 Query 42967 CCCTGGTCGGCATGAACCACGACCTCATG-TGCAAGTACATCCAGTACGTCGCCGACCAT 43025 |||| | ||||||||| ||||||||| |||| ||||| ||| || || |||||| Sbjct 14868 CCCTCATTGGCATGAACTGTGACCTCATGAAGCAA-TACATAGAGTTTGTGGCAGACCAT 14810 Query 43026 CTCCT 43030 || || Sbjct 14809 CTGCT 14805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944126723680000