Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq16236 107 2e-18 seq9774 102 7e-17 >seq16236 Length=166078 Score = 107 bits (118), Expect = 2e-18 Identities = 143/199 (72%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294 |||| || || || ||||| | ||| | || | || | ||||||||| |||||||| | Sbjct 14957 TAAGGCCGGTGACCTGAGCGATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATG 14898 Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354 | || || | |||||||| | || | ||| ||||||||||| || ||||| || | | Sbjct 14897 GCACACCGAGGCCCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAGCTCGCCATTGG 14838 Query 20355 CTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCG 20414 | || ||||| ||||| || | || ||||| || || ||||| | | ||| || | Sbjct 14837 CAACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTG 14778 Query 20415 GGTTCCACGCACACATAAT 20433 ||||||| ||| ||| ||| Sbjct 14777 GGTTCCAAGCAGACAAAAT 14759 >seq9774 Length=82367 Score = 102 bits (112), Expect = 7e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 20235 TAAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAG 20294 |||| || || || ||||||| ||| | || | || | ||||||||| |||||||| | Sbjct 80901 TAAGGCCGGTGACCTGAGCAATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATG 80960 Query 20295 GAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAG 20354 | || || | | |||||| | || | ||| ||||||||||| || | ||| || | | Sbjct 80961 GCACGCCGAGGCTCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAACTCGCCATTGG 81020 Query 20355 CTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCG 20414 | || ||||| ||||| || | || ||||| || || ||||| | | ||| || | Sbjct 81021 CAACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTG 81080 Query 20415 GGTTCCACGCACACATAAT 20433 ||||||| ||| ||| ||| Sbjct 81081 GGTTCCAAGCAGACAAAAT 81099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441273491120000