Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_009382.1 Length=38760 Score E Sequences producing significant alignments: (Bits) Value seq10445 542 7e-150 >seq10445 Length=32057 Score = 542 bits (600), Expect = 7e-150 Identities = 1421/2141 (66%), Gaps = 61/2141 (3%) Strand=Plus/Plus Query 793 TGCCGGCGCTGCGCCTGTACGCGTTGGTCGATGGTGCGCAATACCAGCTGCAGATCGGCC 852 |||| |||||||| ||||| || |||||||||| | ||| |||||| ||| || || Sbjct 25085 TGCCCGCGCTGCGGCTGTATGCCCTGGTCGATGGCGTGCAGTACCAGACCCAGCTCTGCA 25144 Query 853 GGCCGATCCTGCCGCGGTCCTGCATGGCCTCGCTGTTCGAGGGCACGGCCGACGCGCCGT 912 || ||| ||| | | | | | |||| || || ||||| | |||||| || Sbjct 25145 AGCGATTCCAGCCTGGCAGCGGGCTATTCCCGCTCTTTGATGGCACACCGGACGCGGCGC 25204 Query 913 TGGCCCATGCCGGCCCCTGGCTGGTCGATGTCGAGCAGGCGGATAACGAGC---TGGTGA 969 |||||||||| ||||| |||||||| |||| || | ||| | | |||| |||| Sbjct 25205 TGGCCCATGCAGGCCCTTGGCTGGTGGATGCCGCTCTGGCCGGT---GAGCCAATGGTCG 25261 Query 970 GCGATCTGGGC-CGCATGGAGAC-ATGGGCGCCGGCGGTGTCCTGGCTGATCGCGCAGAC 1027 ||| |||| | ||| || || ||| ||||| || | |||||| ||||||||| | Sbjct 25262 CCGAGCTGGCCACGCTTGAGCACGATG--CGCCGTCGCTCTCCTGGTTGATCGCGCCGCA 25319 Query 1028 GGATCTCCCCGGCCTGGCCGAGCTGCTGCGCCAGCAGCTCGACGTTCGCCTGCCTGACGG 1087 || | |||||| | | ||||||| | || |||||| || ||||| ||||| Sbjct 25320 AGACTTGGACGGCCTCGGTCAACTGCTGCAACTGCGGCTCGATGTGGCGCTGCCGGACGG 25379 Query 1088 CCGCACCGCATTGCTTCGTTTCTGGGACCCGCGCGTGTTGGTCAGGTTGGT-CGAAGTGC 1146 |||| ||| |||||||| ||||||||||||||||| |||||| ||| || | || Sbjct 25380 GCGCAGCGCCTTGCTTCGCTTCTGGGACCCGCGCGTCCTGGTCAACCTGGCGCGCAC-GC 25438 Query 1147 TGGACGGCGGCCAGCTGCAAGCGTTCTTCGCCCACCTGTACGAATGGCACATGCTGCGCG 1206 | ||||| | |||| | | |||||||| |||| | | || |||||| |||||| || Sbjct 25439 TCGACGGTGCGCAGCGTGAGGAGTTCTTCGGCCACATCCATGAGTGGCACCTGCTGCACG 25498 Query 1207 ACGGCGAGCGTGTGTGGATCGGGAGAGACCATGCTGACGCTTAACGACGAGCAATGGCAG 1266 | || |||| || ||||||||||| | |||||||||||| | || | ||| |||||| Sbjct 25499 AAGGGCAGCGCGTTTGGATCGGGAGGCAACATGCTGACGCTCACTGAGGCGCAGTGGCAG 25558 Query 1267 GCGCT---ACAGGCCTACGACGCTCGGCACTTCGTCATGGCCGTGCGCGACCAGTTCGTG 1323 | || ||||| | || || || || ||||| ||||||| |||| ||||| || Sbjct 25559 ACCCTGCAACAGGGC---GAAGCCCGCCAGTTCGTGGCGGCCGTGTGCGATGAGTTCCTG 25615 Query 1324 ACCGATCATCCCGCGGNNNNNNNNGAGCCCGGCGGCCAGGTCGTTCTGGATCGCATGCTG 1383 || | | |||| | |||||||| || |||| || || | || |||| | Sbjct 25616 GCCAACCGGCCCGAGATGCGCGAGCAGCCCGGCCGCGAGGTGGTACTAGTGCGGATGCAG 25675 Query 1384 GCGGCCTACGACCACGCCGAACGCCTGGGCTTCACGTCTACGCCGCACGTCGTCTGGTTG 1443 | ||||||||| |||| | || || ||||| ||||| ||| |||| || || Sbjct 25676 GACGCCTACGACTACGCTGCCCGTGCAGGTTTCACCAGCACGCCACACATCGTGCGGCTG 25735 Query 1444 CTGTACCTGGCGGCGGATGCCCCG-GCCTGGATCTCGGACCCGGTAGTCGATGCGTTCCT 1502 |||||||| | ||||| || ||| || | || | ||||| | |||||| | ||| Sbjct 25736 ATGTACCTGTCTGCGGACGCTCCGCGCATCCATGATG-ACCCGCTGGTCGATCACTACCT 25794 Query 1503 GCGCGAGCGGCCCGGCACGCCCGAGCAGCGCTTGGACGACATGGCCGCCGTCATGCAACG 1562 |||| ||| | |||||| || || || | ||||| | | ||||||||| ||| Sbjct 25795 GCGCAAGCCTGGGGCCACGCCAGAACAACGGCTCGACGATCTCGATGCCGTCATGAAACA 25854 Query 1563 CAAATTGGAAGGGGGTCTTTGATGGCGGGTGCAGCCGTCCCACTGATTGAggcagccgca 1622 |||| | | || | || ||||||||| ||||| || ||||| |||| | | Sbjct 25855 CAAACTCAAGGGAGATCGTTGATGGCGTCACTGGCCGTACCGCTGATCGAGGGCGTGGTT 25914 Query 1623 gcgcgcgccctggcggcactcggcttcggcgcggcggccggcgccaccggcgaggccgcg 1682 | || | | |||| || |||||| | |||| | |||||||| | || || |||||| Sbjct 25915 GTCCGTGTCTTGGCTGCGCTCGGCGTGGGCGTCGTCGCCGGCGCGGCAGGTGAAGCCGCG 25974 Query 1683 cgcgacgcgATCCGCAAACGCAAGGAAGCGGCGGACAAGGCCAAAAGCTCGCCGGTCGCG 1742 || | ||||| ||| | || | || |||||||| || |||| ||||| Sbjct 25975 AAGGAGCAGGCACGCAAGCGCCAAGAGGAAGCCGACAAGGCGAAGTCTGCGCCTATCGCG 26034 Query 1743 CAGACCGACGCACAAACCAAGGCCCAGGCACGGAAGAAGTGCCCGGAGTGCCCGCCGGAC 1802 | |||||||| || |||| | ||||| ||||| |||||||| || || Sbjct 26035 CGCACCGACGCGACGACAAAGGAGC--GCACG----AAGTGTAAAGAGTGCCCACCAGAT 26088 Query 1803 AAAGGT-GTGCCGTTCACGCGCACCTTTCCCAGGCGCCTGCCGTGGGTGGACTATCAGGC 1861 || || | || | ||| || || || |||| | ||||| |||||||| || Sbjct 26089 AAGGGGAGAACCAAAGA-GCGGACATTCCCTGTTCGCCAGGATTGGGTTGACTATCAAGC 26147 Query 1862 CCGTATCTGCGGCATGCCATCGGGGCCGAACCACATCATCGAATGGATGTTCAACGCAGT 1921 ||| | | || ||||| || |||| |||||| |||||| ||||||| | Sbjct 26148 TCGTGTAGGTGGGATGCCGAATGGCCCGACTTTCATCATTGAATGGGAATTCAACGG-GC 26206 Query 1922 GCGG-TTCGACGGCTTCATGTCGGGCGCGTGCCTGCTGAAAGAGGCCAAGGCCGGATACG 1980 | | || ||||| ||| | || | || ||| | || ||||| ||||||| || |||| Sbjct 26207 GAGAATTTGACGGATTCGTATCTGCCGAGTGTTTACTCAAAGAAGCCAAGGGTGGCTACG 26266 Query 1981 ACCAGTTTTTCGATGAGTGGGGCCGGCCGCTGCGCTGGTGGGCCTACAACGTCGAGGACA 2040 || || || ||||||||||| || || | |||||||| ||| | || || || | Sbjct 26267 ACAGATTCTTTGATGAGTGGGGACGACCCAAGAAGTGGTGGGCTTACCAAGTAGACGAGA 26326 Query 2041 TCATCGCGGAAATCGTGCGTCAGGACCTGGCCGCCAGCCCGAAGCCGCCTGTCCGGCTGG 2100 | || | |||| || ||| | |||| || | || | |||||| |||| ||| Sbjct 26327 TGATGGATCAAATGAGCCGCCAGAGCTTGGCTGCGATGCCAAGGCCGCCCATCCGATTGG 26386 Query 2101 AATGGCACTGGCAGCAGGCGACCAGCTACCGCTATTTCTCCCGGATCCTGAGCGCCGCCG 2160 | ||| |||||| | || ||||| || |||||||| ||||| |||| || Sbjct 26387 AGTGGTTTTGGCAGGAACCGCTTAGCTATCGGTATTTCTCAAAAATCCTCGTCGCCATCG 26446 Query 2161 CGCCCAGCGTTCCGCACCACTACACCCCATGACAAAGCCACCG---CTCAACGTCCAGTT 2217 | ||| ||| |||||||||||| ||||||| ||| ||||| || | | | ||| Sbjct 26447 CCCCCGACGTACCGCACCACTACTTCCCATGAAAAACACACCGCCCCTTAGCATTGCGTT 26506 Query 2218 CCGCGCGCAGTACAGGGCCGATCTGGCGCA-CCCGCAGACCTTGCATGACAACCT---CA 2273 | | ||||||| || ||| ||| | || || |||| | ||| | | || Sbjct 26507 CAGAGCGCAGTTCAAAATCGACCTGTTAAATCCACCAAGTCTTG-AAGACGATTTAGCCA 26565 Query 2274 ATGCGCTGTTCCAGCTGCGCGAGCGAAT-CGGCGGTCTGTCCCCGCACATGAAAAAATGG 2332 | | |||| || | || ||| | || | || |||| ||| | || | ||| Sbjct 26566 A---GTTGTTTGAGTTTCGACAGCATTTGCGTCAGT-TGTCGCCGAAGCTGGCGGAGTGG 26621 Query 2333 CTTCTCGGCGGCGCCAACATGGATGAAGCGCTGCAGTACGGCGCCTTCGAAGATGACGGT 2392 | | || || | || | ||| || || | | |||| |||||| || || ||| Sbjct 26622 TTCTTGGGGGGAGACACAAAGGACGAGGCCTTTCTGTACTCCGCCTTTGATGAGAGCGGC 26681 Query 2393 CCGGCGCCGGCCGCCGAAGCGGTCTTGCGCGAGCGTAACAAGGGGCGAGAGAAACCGCCG 2452 || | | || | ||| || ||||||| || | | || |||| | Sbjct 26682 CCTACCACTGCGATTGCAGCCGTTCTGCGCGA---AAAATACCGCAGAAAGAAGGGGGAC 26738 Query 2453 ATCA---CCCGCACGATCGGCCTTTGGAACGGCGAGGAAGGCCTGGACGGCGCAACAATG 2509 |||| | || | || ||||||||||||||||| |||||||| || |||||||| ||| Sbjct 26739 ATCATCTCTCGTCCAATTGGCCTTTGGAACGGCGAAGAAGGCCTTGAGGGCGCAACCATG 26798 Query 2510 GGGCTGGTCTACATTGAGGCGAACCGTCCGAGCATGGTGAACTTCGAGACGAGCAGCGCG 2569 |||| | | || | | | || |||||| || | |||| |||||| | ||| Sbjct 26799 GGGCAGCTATATAGGCAAGTTAAAGAACCGAGCCTGATTCACTTTGAGACGGAGATCGCA 26858 Query 2570 GGGTTCCTGGCCTACGACCACGCCCTGGCGGCGTGTCGGGCGATGATCGACATCTGGCGC 2629 | ||||| | ||| | | ||| || || ||| |||| || ||| | Sbjct 26859 GAATTCCTCGAATACTCTAAGGTGCTGAGTGCCACGAGGAAGATCGTCGAAATATGGAAC 26918 Query 2630 CCGCTGTTCGTGTCGGTCGGGCCGGACTTCTACGACCCCGTGTTCAAGGACCGTCCCGGT 2689 ||||| || || |||| |||| |||||||| | || |||||||| || ||| | Sbjct 26919 CCGCTATTTTCTTCTGTCGAACCGGTTTTCTACGAATCAGTTTTCAAGGATCGCCCCAGC 26978 Query 2690 GTCGGCTGGATGCTGTATCTCCCCCAGGCGATCACCGTGCAGCAGGTGCCCGAGGCCGGC 2749 || || |||||||| || || |||| | | | || || ||||| || |||||||| || Sbjct 26979 GTGGGATGGATGCTTTACCTGCCCCGAGTGCTGACTGTCCAGCAAGTCCCCGAGGCTCGC 27038 Query 2750 GCGCTGATGCCGGTGCTGGGC---GAC---AAG---AAA---CATCAGGCCGGCACGATC 2797 |||||| |||| || ||||| ||| ||| ||| | ||| ||| |||||| Sbjct 27039 GCGCTGGTGCCCGTCATGGGCAAGGACGCAAAGGGCAAAGACAAGCAGCTCGGGACGATC 27098 Query 2798 ATTGTCAGCGTGACCGACGAGCCGTTTTGCGACCTGAACCCCGAGCACGTCAGGATCGCC 2857 || |||||||| ||||| || ||||| | ||| ||||||||||||||||| ||||||| Sbjct 27099 ATCGTCAGCGTCACCGATGAACCGTTCTCGGACGAGAACCCCGAGCACGTCAAGATCGCC 27158 Query 2858 AACAAGATCGAGGTGCGGCTGGCCGACCAGGGGCTGCTGCC 2898 ||| |||||| | ||||||| ||| || | ||||||| Sbjct 27159 AACGCCATCGAGATTCGGCTGGTCGATCAAGACTTGCTGCC 27199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 123883914152000