Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq8969 172 1e-37 seq9457 156 1e-32 seq9360 132 1e-25 seq9661 120 7e-22 >seq8969 Length=73153 Score = 172 bits (190), Expect = 1e-37 Identities = 291/418 (70%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 166956 AATTTTCTGATCAGAACCGGGAACACGTGACCGTTATTAAGATCGTATCGGTCATTTGGT 167015 ||||| || |||| |||| ||||| || || || || ||||| ||| ||||| Sbjct 64650 AATTTCCTTATCATGGCCGGCAACACATGCGAATTGTTGAGGTCGTAGTTGTCGTTTGGA 64591 Query 167016 CCGCTGAGATTCGTTGGCATCACCGAGACGAAATTACATCCATATTGTTTTCTGTAAGCA 167075 || ||||| || ||||||||||| | |||||| ||||||||||||| | || || Sbjct 64590 CCATATAGATTGGTGGGCATCACCGAAATGAAATTGCATCCATATTGTTCACGATAGGCC 64531 Query 167076 TCACACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGA 167135 |||||||| | || ||||| ||||| ||||| || || || | ||| ||||||||||| Sbjct 64530 TCACACATTTTTATGCCGGCTATTTTGGCTATGGCATAAGGCTCGTTGGTGGGTTCGAGC 64471 Query 167136 AATCCTGTCATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAA 167195 || || || | | ||| || || || | || | |||| |||||| |||||||| Sbjct 64470 AAGCCAGTTAATAAATAATCCTCTTTTAATGGCTGAGGAGCCATTTTTGGATAAATGCAG 64411 Query 167196 CTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGAATGACATTC 167255 ||| | ||||| |||||||| ||||| | | ||| | || || ||||| Sbjct 64410 GACGAACCCAAAAACATCAGTTTTTTGACTCCTGCTAGGTAGGAGCCGTGTATTACATTG 64351 Query 167256 GTCTGAATCATCAGATTATCGTGAATA-AAATCGCCC-CCGAAGGAGTTGTTCGCGTGAA 167313 ||||||| ||| || |||| ||| |||| |||| | ||||| ||| || || | Sbjct 64350 TTCTGAATTTGCAGGTTTTCGT--ATAGAAATTGCCCTCTGAAGGTGTTATTGGCCACTA 64293 Query 167314 TACCTCCTACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAA 167371 | || |||||||| || || || | ||| || || || ||| ||| | |||| ||| Sbjct 64292 TTCCGCCTACTTTGGCTGCTGCCAAAAACACATAATCAGGTTTTTCTTTTTCGAGAAA 64235 >seq9457 Length=55282 Score = 156 bits (172), Expect = 1e-32 Identities = 293/427 (69%), Gaps = 8/427 (2%) Strand=Plus/Plus Query 72407 TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGAC 72466 ||| |||| ||||| ||| | || ||| | || || ||| ||||| | || ||| | Sbjct 33460 TCGCATTTATCAAGCCTCTACCTCTGAGCTATACGGCTTAGTACAAGAGGTGCCGCAGTC 33519 Query 72467 GGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTG 72526 |||| ||||| |||||||| | ||||| | || || || || || | || || Sbjct 33520 TGAAACCACTCCATTTTATCCAAGGTCTCCTTATGCAGTAGCCAAATTATATGGCTACTG 33579 Query 72527 GAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTC 72584 ||| | ||||| || || || | || |||||||||| ||||| || ||| Sbjct 33580 GATTACAGTAAAC--TATCGCGAAGCTTACAACATGTATGCTTGCAATGGCATCCTATTC 33637 Query 72585 AATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGT- 72643 || ||||| || |||||| | |||||||| ||||||||||| | || || Sbjct 33638 AACCACGAATCGCCTTTGAGAGGCGAAACCTTCGTGACACGTAAAATCACTAGGGCAGTT 33697 Query 72644 -CGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAA 72702 | | |||| | | ||| ||| |||| ||| ||| || ||| | |||||||||| Sbjct 33698 TCACAAATAGCCTTA--GGTCAGGAAGAATGTCTGTTTCTTGGAAATCTCGATGCCAAAA 33755 Query 72703 GAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATA 72762 |||| ||||| |||| || || ||| | || || ||||||||||| |||||||||| Sbjct 33756 GAGACTGGGGTCATGCCAAAGACTACATTGAGGCCATGTGGTTGATCTTGCAACAAGACG 33815 Query 72763 CTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGTGAAAA 72822 |||| || ||||| ||||| || || | || || | ||||||||| || || |||| Sbjct 33816 TGGCGGAAGATTATGTTATTGCTACTGGTATTACCACCACCGTTCGTGATTTTGTAAAAA 33875 Query 72823 TGGCATT 72829 |||| || Sbjct 33876 TGGCCTT 33882 >seq9360 Length=410125 Score = 132 bits (146), Expect = 1e-25 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||| || ||||| || || || || || ||| Sbjct 230780 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAG 230721 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || |||||||||||| ||||||||||| ||||| || ||||| || |||||||| Sbjct 230720 ATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTC 230661 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | |||| | || || || || ||||| ||||| || ||||| ||||| || Sbjct 230660 TCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACA 230601 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 230600 AAGATCTGCAT 230590 >seq9661 Length=48700 Score = 120 bits (132), Expect = 7e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || || || || || ||||| || || || || ||| Sbjct 31627 TCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAG 31686 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| ||||| ||||| ||||| ||||| ||||| ||||| || Sbjct 31687 ATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTC 31746 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | ||||| ||||| || ||||| ||||| ||| Sbjct 31747 TCGATGGTATCCGAGGCCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACG 31806 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 31807 AAGATCTGCAT 31817 Score = 116 bits (128), Expect = 9e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || ||||||| || || || ||||| || || || || || || ||| Sbjct 31855 TCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAG 31914 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || ||||||||||| ||||| ||||| ||||| || || ||||| |||||||| Sbjct 31915 ATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTC 31974 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || || | || || ||||| || ||||| ||||| ||| Sbjct 31975 TCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACG 32034 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 32035 AAGATCTGCATT 32046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179382342204000