Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8969 167 5e-36 seq9457 156 9e-33 seq1447 86.0 1e-11 >seq8969 Length=73153 Score = 167 bits (184), Expect = 5e-36 Identities = 290/418 (69%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 149100 AATTTTCTGATCAGAACCGGGAACACGTGACCGTTATTAAGATCGTATCGGTCATTTGGA 149159 ||||| || |||| |||| ||||| || || || || ||||| ||| |||||| Sbjct 64650 AATTTCCTTATCATGGCCGGCAACACATGCGAATTGTTGAGGTCGTAGTTGTCGTTTGGA 64591 Query 149160 CCGCTGAGATTCGTCGGCATGACTGAGACGAAATTACATCCATATTGTTTTCTGTAAGCA 149219 || ||||| || ||||| || || | |||||| ||||||||||||| | || || Sbjct 64590 CCATATAGATTGGTGGGCATCACCGAAATGAAATTGCATCCATATTGTTCACGATAGGCC 64531 Query 149220 TCACACATCTCGATTCCGGCGATTTTCGCTATCGCGTATGGTTTGTTAGTGGGTTCGAGA 149279 |||||||| | || ||||| ||||| ||||| || || || | ||| ||||||||||| Sbjct 64530 TCACACATTTTTATGCCGGCTATTTTGGCTATGGCATAAGGCTCGTTGGTGGGTTCGAGC 64471 Query 149280 AATCCTGTCATCAGATATTCTTCCTTGATAGGATTTTGAGCTTCTTTTGGGTAAATGCAA 149339 || || || | | ||| || || || | || | |||| |||||| |||||||| Sbjct 64470 AAGCCAGTTAATAAATAATCCTCTTTTAATGGCTGAGGAGCCATTTTTGGATAAATGCAG 64411 Query 149340 CTGCTACCGAGAAACACGAGTTTTTTCACTCCGAACATTTTGGACGCATGAATGACATTC 149399 ||| | ||||| |||||||| ||||| | | ||| | || || ||||| Sbjct 64410 GACGAACCCAAAAACATCAGTTTTTTGACTCCTGCTAGGTAGGAGCCGTGTATTACATTG 64351 Query 149400 GTCTGAATCATCAGATTATCGTGAATA-AAATCGCCC-CCGAAGGAGTTGTTCGCGTGAA 149457 ||||||| ||| || |||| ||| |||| |||| | ||||| ||| || || | Sbjct 64350 TTCTGAATTTGCAGGTTTTCGT--ATAGAAATTGCCCTCTGAAGGTGTTATTGGCCACTA 64293 Query 149458 TACCTCCTACTTTTGCAGCCGCGAGAAATACGTATTCTGGTAGTTCGATCTCGAAAAA 149515 | || |||||||| || || || | ||| || || || ||| ||| | |||| ||| Sbjct 64292 TTCCGCCTACTTTGGCTGCTGCCAAAAACACATAATCAGGTTTTTCTTTTTCGAGAAA 64235 >seq9457 Length=55282 Score = 156 bits (172), Expect = 9e-33 Identities = 293/427 (69%), Gaps = 8/427 (2%) Strand=Plus/Plus Query 68396 TCGAATTTGCCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGAC 68455 ||| |||| ||||| ||| | || ||| | || || ||| ||||| | || ||| | Sbjct 33460 TCGCATTTATCAAGCCTCTACCTCTGAGCTATACGGCTTAGTACAAGAGGTGCCGCAGTC 33519 Query 68456 GGAAAATACTCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTG 68515 |||| ||||| |||||||| | ||||| | || || || || || | || || Sbjct 33520 TGAAACCACTCCATTTTATCCAAGGTCTCCTTATGCAGTAGCCAAATTATATGGCTACTG 33579 Query 68516 GAT--CTGTAAAAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTC 68573 ||| | ||||| || || || | || |||||||||| ||||| || ||| Sbjct 33580 GATTACAGTAAAC--TATCGCGAAGCTTACAACATGTATGCTTGCAATGGCATCCTATTC 33637 Query 68574 AATCACGAGAGTCCCAACAGAGGCCATCAGTTCGTGACTCGTAAAATCACGAAGGTGGT- 68632 || ||||| || |||||| | |||||||| ||||||||||| | || || Sbjct 33638 AACCACGAATCGCCTTTGAGAGGCGAAACCTTCGTGACACGTAAAATCACTAGGGCAGTT 33697 Query 68633 -CGCGAATATTTTCAATGGTGTCGAAAAATGCATGTATCTCGGTAATATAGATGCCAAAA 68691 | | |||| | | ||| ||| |||| ||| ||| || ||| | |||||||||| Sbjct 33698 TCACAAATAGCCTTA--GGTCAGGAAGAATGTCTGTTTCTTGGAAATCTCGATGCCAAAA 33755 Query 68692 GAGATTGGGGATATGCGAAGGATTACGTAGAAGCAATGTGGTTGATGCTGCAACAAGATA 68751 |||| ||||| |||| || || ||| | || || ||||||||||| |||||||||| Sbjct 33756 GAGACTGGGGTCATGCCAAAGACTACATTGAGGCCATGTGGTTGATCTTGCAACAAGACG 33815 Query 68752 CTCCGGATGACTATGTGATTGCAACAGGGAAAACAACGAGCGTTCGTGAGTTCGTGAAAA 68811 |||| || ||||| ||||| || || | || || | ||||||||| || || |||| Sbjct 33816 TGGCGGAAGATTATGTTATTGCTACTGGTATTACCACCACCGTTCGTGATTTTGTAAAAA 33875 Query 68812 TGGCATT 68818 |||| || Sbjct 33876 TGGCCTT 33882 >seq1447 Length=1029730 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 59843 GGAAGAGGACTGAATGCACCAGTTGCTTTTGAGGGTGCGTTGAAACTCAAAGAAATCTCG 59902 ||||||||| ||| ||||| || | || || || ||||||||||||||||| || Sbjct 19179 GGAAGAGGATACAATTTCCCAGTGGCACTAGAAGGAGCATTGAAACTCAAAGAAATTTCT 19120 Query 59903 TATATTCACGCAGAGGGGTTCCTGGGAGGCGAGTTGAAACACGGTCCCCTCGCACTCCTC 59962 ||||| |||||||| |||| | | | || ||||||||||||| |||||||| | Sbjct 19119 TATATCCACGCAGAAGGGTATCCAGCTGCAGAAATGAAACACGGTCCTATCGCACTCATT 19060 Query 59963 GACGATAAAATCCCCGT 59979 || || || |||| || Sbjct 19059 GATGAAAATCTCCCTGT 19043 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102625648300000