Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_010116.1 Length=58663 Score E Sequences producing significant alignments: (Bits) Value seq1 113 2e-20 >seq1 Length=2207822 Score = 113 bits (124), Expect = 2e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 6574 CGCCCGGGCGCTTTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGT 6633 |||||||||||| |||||| |||||||||| |||| || || ||||| ||||| Sbjct 722704 CGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGGCGT 722763 Query 6634 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 6693 ||||||| | ||| ||||||| ||||||||| | |||||||| ||| | || Sbjct 722764 GCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTCTGC 722823 Query 6694 CACGAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTC 6750 ||| ||||| || | ||||| ||||| || ||||| ||| ||||| ||||||| Sbjct 722824 CACCAACCCTTGTGCGGAGCAGCCGCTGCCTCCCTATGGTTGCTGCTGCCTGGGCTC 722880 Score = 113 bits (124), Expect = 2e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 6574 CGCCCGGGCGCTTTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGT 6633 |||||||||||| |||||| |||||||||| |||| || || ||||| ||||| Sbjct 725239 CGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGGCGT 725298 Query 6634 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 6693 ||||||| | ||| ||||||| ||||||||| | |||||||| ||| | || Sbjct 725299 GCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTCTGC 725358 Query 6694 CACGAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTC 6750 ||| ||||| || | ||||| ||||| || ||||| ||| ||||| ||||||| Sbjct 725359 CACCAACCCTTGTGCGGAGCAGCCGCTGCCTCCCTATGGTTGCTGCTGCCTGGGCTC 725415 Score = 86.0 bits (94), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 6128 GAAGCCGCAGCCACGATGCGGATGGGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGT 6187 || ||||| | || |||||| ||||| || ||||||| || || || |||| Sbjct 722294 GAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATCCGC 722353 Query 6188 CCTCGCGGCGACCTGATCCGCAAGCTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATG 6247 || | |||| | | || || | |||||| | ||||||| || |||||| ||| Sbjct 722354 CCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTATATG 722413 Query 6248 CACATCTTCGACGCGATCT-GTAAGTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCA 6306 | | || ||| || ||| || || || | ||| ||||| ||||| || || || Sbjct 722414 CGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGAGTCCGCCGGCGCGCGCCGTGGCGCGCA 722472 Query 6307 GATGGGGGTGATGCGCGTGGACCATCCCGACATTGAGGAGTTCATTCACGCCAA 6360 ||||||||| |||| |||||||||||||| |||| ||||| |||||||| Sbjct 722473 AATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCAA 722526 Score = 86.0 bits (94), Expect = 2e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 6128 GAAGCCGCAGCCACGATGCGGATGGGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGT 6187 || ||||| | || |||||| ||||| || ||||||| || || || |||| Sbjct 724829 GAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATCCGC 724888 Query 6188 CCTCGCGGCGACCTGATCCGCAAGCTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATG 6247 || | |||| | | || || | |||||| | ||||||| || |||||| ||| Sbjct 724889 CCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTATATG 724948 Query 6248 CACATCTTCGACGCGATCT-GTAAGTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCA 6306 | | || ||| || ||| || || || | ||| ||||| ||||| || || || Sbjct 724949 CGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGAGTCCGCCGGCGCGCGCCGTGGCGCGCA 725007 Query 6307 GATGGGGGTGATGCGCGTGGACCATCCCGACATTGAGGAGTTCATTCACGCCAA 6360 ||||||||| |||| |||||||||||||| |||| ||||| |||||||| Sbjct 725008 AATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCAA 725061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187559900500000