Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1448 111 2e-19 seq10358 107 2e-18 seq14944 105 8e-18 seq15668 95.1 1e-14 >seq1448 Length=175156 Score = 111 bits (122), Expect = 2e-19 Identities = 104/130 (80%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATT-CGAGAAGCACAGTC 126104 |||||| || ||| || |||||||||||||||||||| || || | | ||| ||| | Sbjct 97745 GGCAAAGTCAGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGCTAAAAG-TCAGAC 97803 Query 126105 CTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGA 126164 | |||||||| || |||||||||| ||||||||| | ||| |||||||||||||| | Sbjct 97804 CCGGCATGAGGCCTCGCTTCTTCAGCCAGAAAATTGAGGCAAAAGAACCCGAGAAGAAAA 97863 Query 126165 TTCCCTCCAC 126174 | |||||||| Sbjct 97864 TCCCCTCCAC 97873 >seq10358 Length=34033 Score = 107 bits (118), Expect = 2e-18 Identities = 101/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 |||||| || ||| || ||||| ||||| |||||||| || || ||| ||| || Sbjct 110 GGCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGTTGCTGAAAGTCAGACC 169 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 |||||||| || |||||||||| ||||||||||| | ||| || ||||||||||| || Sbjct 170 CGGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAGATCCCGAGAAGAAAAT 229 Query 126166 TCCCTCCAC 126174 |||||||| Sbjct 230 CCCCTCCAC 238 >seq14944 Length=2286 Score = 105 bits (116), Expect = 8e-18 Identities = 249/369 (67%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 10787 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 10846 || ||||| || |||||||| || | |||| ||| ||||| || |||||| || ||| Sbjct 718 CGGTCAAATCGGCCTGGGCGCAGCAAGGCGGGGTCCAGGATGTCCGGGCGGTTGGTGGCC 659 Query 10847 GCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 10906 || || || | || || | | | |||||||| |||||||| || | || ||| Sbjct 658 GCCATCACGATGACACCGAGGTTGGTCTCAAAGCCGTCCATCTCGACCAGCATCTGGTTG 599 Query 10907 ATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 10964 | ||| || ||||| || ||||| | | ||| || |||| || || ||||| Sbjct 598 AGGGTCTGCTCGCGCTCGTCATTGCCA--CCGCCCAGGCCAGCACCACGATGGCGACCGA 541 Query 10965 CGGCGTCAATTTCATCGATGAAAACGATACACGGTT-GATTTTCACGGGCAACTTCAAAG 11023 | ||||| ||||| || ||||| | ||| || ||| | | ||| || || | || Sbjct 540 CAGCGTCGATTTCGTCAATGAAGATGATGCAGGGTGCGCTCTTCTTGGCTTGCT-CGAAC 482 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAA 11083 || || || || | || || || || |||||||| ||||| || | | | | || Sbjct 481 ATGTCGCGCACACGGGCTGCGCCCACGCCAACAAACATCTCCACGAAGTCAGAGCCCGAG 422 Query 11084 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 11142 || | || ||| || || |||| |||||||||||| || ||| | |||||||| || Sbjct 421 -ATGGTGAAGAAAGGCACCTTGGCTTCACCCGCGATAGCCTTGGCCAACAGGGTCTTACC 363 Query 11143 CGTCCCAGG 11151 ||| || || Sbjct 362 CGTGCCGGG 354 >seq15668 Length=647317 Score = 95.1 bits (104), Expect = 1e-14 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||||||| ||||||| | ||||| || ||||||||| || | ||| || || ||||| Sbjct 300922 TAGATATTGCTCGTGTAGGCCTCAATGCTCTCATTGTTGCCGAGGATCTGAGCAGTGGAA 300981 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACG 114036 || ||||||||||| |||| || ||||||||||| Sbjct 300982 GCAGTGGGCATGGGCGCCAGCAGGAGGCTGTTACG 301016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597219195440000