Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq8262 120 3e-22 seq11448 116 4e-21 seq1003 114 1e-20 seq10859 107 2e-18 seq15779 102 9e-17 seq7683 102 9e-17 seq12292 93.3 5e-14 seq3669 86.0 7e-12 >seq8262 Length=289 Score = 120 bits (132), Expect = 3e-22 Identities = 83/94 (88%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||||||||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 188 ATCAAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 129 Query 57055 TACTCACCACTATACTACCGAGGATTGAATATAT 57088 |||||||||||||||||||||||| ||| |||| Sbjct 128 TACTCACCACTATACTACCGAGGAGTGACGATAT 95 >seq11448 Length=766531 Score = 116 bits (128), Expect = 4e-21 Identities = 81/92 (88%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 56992 TTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 57051 ||| | ||| ||||||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 395296 TTTCTAAAATATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 395355 Query 57052 ACATACTCACCACTATACTACCGAGGATTGAA 57083 ||||||||||||||||||||||||| |||| Sbjct 395356 GGATACTCACCACTATACTACCGAGGAGTGAA 395387 >seq1003 Length=166183 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||||||||| |||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 72588 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 72647 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 72648 TCACCACTATACTACCGAGGA 72668 Score = 114 bits (126), Expect = 1e-20 Identities = 93/110 (85%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 56995 ATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 57054 || ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| | Sbjct 74461 ATTAAAAACATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 74402 Query 57055 TACTCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTGCAA 57104 |||||||||||||||||||||||| || ||||| ||| |||| || ||| Sbjct 74401 TACTCACCACTATACTACCGAGGAGTG-ATATA-AACCTGAAATTTTCAA 74354 Score = 109 bits (120), Expect = 6e-19 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 ||||| |||||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 118751 AAAATATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 118692 Query 57059 CACCACTATACTACCGAGGA 57078 |||||||||||||||||||| Sbjct 118691 CACCACTATACTACCGAGGA 118672 Score = 105 bits (116), Expect = 7e-18 Identities = 73/83 (88%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| |||||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 120505 AAAAACTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 120564 Query 57059 CACCACTATACTACCGAGGATTG 57081 |||||||||||||||||||| || Sbjct 120565 CACCACTATACTACCGAGGACTG 120587 Score = 104 bits (114), Expect = 3e-17 Identities = 75/87 (86%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 120203 AAAAGCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 120262 Query 57059 CACCACTATACTACCGAGGATTGAATA 57085 |||||||||||||||||||| ||| || Sbjct 120263 CACCACTATACTACCGAGGAGTGATTA 120289 >seq10859 Length=313708 Score = 107 bits (118), Expect = 2e-18 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 56995 ATGAAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 57053 || ||| || ||||||| |||| | |||||||||| ||||||||||||||||||||| Sbjct 176696 ATAAAATATATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 176755 Query 57054 ATACTCACCACTATACTACCGAGGATTGA 57082 ||||||||||||||||||||||||| ||| Sbjct 176756 ATACTCACCACTATACTACCGAGGAGTGA 176784 >seq15779 Length=1152238 Score = 102 bits (112), Expect = 9e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064 |||||| |||| | |||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 559777 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 559718 Query 57065 TATACTACCGAGGA 57078 |||||||||||||| Sbjct 559717 TATACTACCGAGGA 559704 >seq7683 Length=315 Score = 102 bits (112), Expect = 9e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 56999 AAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 57058 |||| | |||| |||| | |||||||||| ||||||||||||||||||||| ||||| Sbjct 304 AAAAGCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 245 Query 57059 CACCACTATACTACCGAGGATTGA 57082 |||||||||||||||||||| ||| Sbjct 244 CACCACTATACTACCGAGGAGTGA 221 >seq12292 Length=257813 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| | |||| ||| | |||||||||| ||||||||||||||||||||| |||| Sbjct 223532 AAAAATGTCCTCCCAGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 223591 Query 57058 TCACCACTATACTACCGAGGA 57078 | |||||||||||||| |||| Sbjct 223592 TTACCACTATACTACCTAGGA 223612 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| ||| | |||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 223168 CTCCCAGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 223227 Query 57067 TACTACCGAGGATTGA 57082 ||||||| |||| ||| Sbjct 223228 TACTACCTAGGAGTGA 223243 >seq3669 Length=503006 Score = 86.0 bits (94), Expect = 7e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| |||| | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 285569 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 285510 Query 57067 TACTA 57071 ||||| Sbjct 285509 TACTA 285505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543090577120000