Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq9661 118 1e-21 seq15668 82.4 8e-11 >seq9661 Length=48700 Score = 118 bits (130), Expect = 1e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | ||| || |||| || | |||||| || Sbjct 31849 GTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAACTGCTTACCA 31908 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 31909 GCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTC 31968 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | |||||| ||| ||||| || | || | ||||||||| |||| || Sbjct 31969 ACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTCTTGCCAGTCAGGGTC 32028 Query 64427 TTTACGAAAATTTGCATT 64444 || ||||| || |||||| Sbjct 32029 TTCACGAAGATCTGCATT 32046 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || ||||| |||||||| || | | ||| || | || || | ||||||||| Sbjct 31621 GTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCCATCCTCTAACTGCTTGCCA 31680 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | || || ||||| ||||||||||| || ||||| || ||||| || || ||| Sbjct 31681 GCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTTC 31740 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | ||||| ||| ||||| || | || | |||||||| |||| || Sbjct 31741 ACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAGGGTC 31800 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 31801 TTCACGAAGATCTGCAT 31817 >seq15668 Length=647317 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||||||||||||||| ||| | || | | ||| ||||| |||||||| || ||||| Sbjct 380322 TCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCTTTG 380263 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| ||||| || ||| || | || ||| || || ||||| | || | Sbjct 380262 TCTTGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTAATT 380203 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 ||||| || || | |||||| || || || ||||| || Sbjct 380202 GTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCATCTT 380165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499532379920000