Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_010811.2 Length=231255 Score E Sequences producing significant alignments: (Bits) Value seq2224 140 5e-28 >seq2224 Length=1872321 Score = 140 bits (154), Expect = 5e-28 Identities = 478/730 (65%), Gaps = 29/730 (4%) Strand=Plus/Minus Query 41381 CAGCTTGGCACGCTGGGTTCCGGCAACCACTTCATTGAACTGTGCGTGGACCAGTCGCAA 41440 || || ||||| |||| | || ||||||||||| ||| | ||| ||||| || ||| Sbjct 869727 CACCTGGGCACTTTGGGGACGGGTAACCACTTCATCGAAGTCTGCCTGGACGAG---CAA 869671 Query 41441 GACG---TGTGGATCATGCTGCATAGCGGTTCGCGCGGTGTGGGCAACATCATCGGCCGT 41497 | | ||||| |||||||||| ||||||||| || |||||||| ||||||| Sbjct 869670 GGGGCGGTGTGGTTCATGCTGCACTCCGGTTCGCGTGGGGTGGGCAATGCCATCGGCACC 869611 Query 41498 CACTACATCGAGCGTGCGCAGAAGGAGTGCG---GCATGTGGCACAGCAGCCTGCCGCAC 41554 || | |||||||| || ||||||| || ||| || ||| |||||| | Sbjct 869610 CATTTCATCGAGCTGGCCAAGAAGGACGCCGAGCGCAAC---CAACGCAACCTGCCCGAT 869554 Query 41555 AACGATCTCGCGTTCTTCCCTGAGGACACTCCGGGCTTCAATCACTACGTCCTGTCCATG 41614 | || | || | |||| |||| | | | ||| |||| || | | || Sbjct 869553 GAAGACTTGGCCTACTTCGAAGAGGGGGCGCAGTACTTTGGCGACTATGTGCGCGCGGTG 869494 Query 41615 CTGTGGGCGCAGGACTTCGCTCGGCAGAATCGTGCGGTGATGTTGCAGATCGTGATC-CA 41673 ||||||||| | || || | || || || | |||||| || | | | || | Sbjct 869493 GGTTGGGCGCAGAAGTTTGCGCAGCGTAACCGCGAAGTGATGATGGCCAACCTCATTGCC 869434 Query 41674 AGCGCTGCGTC--GTCATCTGCCGGCC-TTCGAGCTGACGGAAGAGGCGGTGAACTGCCA 41730 | || |||| | |||||| | || || ||| | ||||||||||||||||| Sbjct 869433 ACCG-TGCGACAGGTCATCACCAAACCGTTTGAGTCGCACATCGAGGCGGTGAACTGCCA 869375 Query 41731 CCACAACTATTGTG-AGCAGGAGAACCACTTCGGGCGCAACGTGTGGGTCACGCGCAAGG 41789 ||||||||| |||| |||| ||| |||||| || |||||| || || ||||||| Sbjct 869374 CCACAACTA-TGTGCAGCAAGAGCGCCACTTTGGTGAAGACGTGTTCGTGACCCGCAAGG 869316 Query 41790 GTGCGGTTCGTGCACGTGAAGACGATCTGGGGATCATTCCGGGATCCATGGGTACGAAGT 41849 | ||||| | || | | ||| ||||| ||||| ||||| |||||| || Sbjct 869315 GCGCGGTGAGCGCTAAGAAGGGCGAGCTGGGCATCATCCCGGGCAGCATGGGCGCGCGCA 869256 Query 41850 CGTACATCGTCAAGGGCAAGGGCAATCCGCA----TTCGTACTGCTCGTGCAGTCACGGG 41905 |||||||| ||| |||||| ||| | || | | || ||||| ||||| Sbjct 869255 GCTACATCGTGCGCGGCCTGGGCAACCCGGAAAGCTTTG-AGAGC---TGCAGCCACGGC 869200 Query 41906 GCAGGACGCCGTATGTCGCGCACCGAGGCCGTCAAGCGATTCACCGTCGAAGACCTCGTG 41965 || || ||| ||| |||||| ||||| ||| |||||||| || |||| | | Sbjct 869199 GCGGGCCGCGTGATGAGCCGCACCAAGGCCAAGAAGATGTTCACCGTGGACGACCACATC 869140 Query 41966 CAGCAGACGCAGGGTGTTGAATGCC-CGAAGACCAAGGAAGTGCTGGATGAAATCCCGGC 42024 || ||| ||||| ||||||| | ||||| || | ||| | || |||||||| Sbjct 869139 CAAGCCACGGCCGGTGTGGAATGCCGCAAAGACGAA-GCCGTGATCGACGAAATCCCCAT 869081 Query 42025 CGCGTACAAGGACATCGATCAGGTGATGCTTGACCAAAGCGATCTGGTGGAAGTCGTTCA 42084 || ||||| |||||||| ||||||| | || || ||||||| || || || Sbjct 869080 GGCCTACAAAGACATCGACGCGGTGATGGCGGCGCAGCAGGACTTGGTGGAGGTGGTGCA 869021 Query 42085 TACGCTGAAG 42094 ||| || ||| Sbjct 869020 TACACTCAAG 869011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 739721525200000