Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_011056.1 Length=75811 Score E Sequences producing significant alignments: (Bits) Value seq2224 98.7 5e-16 >seq2224 Length=1872321 Score = 98.7 bits (108), Expect = 5e-16 Identities = 197/291 (68%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 66416 TGAGACCACCACCGGTGGTAAGGCTCTGCGCTTCTACGCCTCGGTGCGTATGGATGTCCG 66475 ||| ||||||||||| || || || ||| ||||||||||||||||| |||| |||| Sbjct 660821 TGAAACCACCACCGGCGGCAATGCCCTGAAGTTCTACGCCTCGGTGCGCCTGGACATCCG 660762 Query 66476 CAGGATCG---CCACCGAGAAGGAAGGCGATGAGGCTGTCGGCAACCGCACGCGCGTGAA 66532 | || | ||| | | |||| |||| ||| || |||| | || ||||| || Sbjct 660761 TCGCATTGGTTCCATCAAAAAGG---GCGAAGAGATCGTGGGCAGCGAAACCCGCGTCAA 660705 Query 66533 GGTTGTCAAGAACAAGCTGGCGCCTCCGCACCGCCAGGCTGAGTTTTCCATCGTCTACGG 66592 ||| |||||||||||| | || || || | |||| ||||| |||| | || || Sbjct 660704 GGTCGTCAAGAACAAGGTAGCCCCCCCCTTCAAGGAGGCCGAGTTCGACATCCTGTATGG 660645 Query 66593 CGAGGGCATTTCCCGCGAGGCTGAACTCCTCGACATGGCCGTTTCCCGAGGGCTCATCAA 66652 |||||| | |||||||| || || ||||| ||| ||| ||| || || | Sbjct 660644 CGAGGGTGTGAGCCGCGAGGGCGAGATCATCGACCTGGGCGTGGCCCACAAAATCGTCGA 660585 Query 66653 GAAGTCTGGGGCCTGGTTCAAGTACGGGGACAAGAACATCGGCCAGGGCAA 66703 ||||| || || |||| ||| | | | || || ||||||||||| Sbjct 660584 CAAGTCCGGTGCTTGGTATGCCTACAACGGCGAAAAAATTGGCCAGGGCAA 660534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242417208056000