Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_011222.1 Length=44929 Score E Sequences producing significant alignments: (Bits) Value seq11737 98.7 3e-16 >seq11737 Length=277544 Score = 98.7 bits (108), Expect = 3e-16 Identities = 132/183 (72%), Gaps = 3/183 (2%) Strand=Plus/Plus Query 20131 AACCCGGAGTCAAGAAGGCTAATTGTTAGTGCTTGGAATGTTGGAGAAATACACATGATG 20190 || || || || ||||| || |||||| ||||||||||| | ||||| | ||| Sbjct 158471 AATCCTGATTCTAGAAGACTCATTGTTTCGGCTTGGAATGTGGCGCAAATAGATCAAATG 158530 Query 20191 GCACTTCCTCCGTGCCACTGCTTTTTTCAGTTCTATGTGTCTGAGTCCGGTTATTTGGAC 20250 ||||| |||| ||||||||||| |||||||| |||||| | || || | || Sbjct 158531 GCACTGGCTCCTTGCCACTGCTTGTTTCAGTTTTATGTGGCCGA---TGGAAAATTATCG 158587 Query 20251 TTGAAACTGTACCAAAGAAGCGCAGACCTATTTTTAGGCGTTCCTTTCAATATTGCATCT 20310 | | || ||||||||||| ||||| ||||| |||||||| || || ||||| ||| Sbjct 158588 CTACAGCTCTACCAAAGAAGTGCAGATACCTTTTTGGGCGTTCCCTTTAACATTGCTTCT 158647 Query 20311 TAT 20313 ||| Sbjct 158648 TAT 158650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143620494556000