Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq9360 96.9 2e-15 seq9661 89.7 4e-13 >seq9360 Length=410125 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| |||| | || || || || |||||||| || || || |||||||| ||| Sbjct 230817 GCCACCCCGCAGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 230758 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 || | | | ||||| || || |||||||| | || | ||||||||| ||| || Sbjct 230757 CAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGG 230698 Query 15069 AATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 ||||||||||| || ||||||| || || | || || |||||| || || Sbjct 230697 GATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCAC 230638 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | || ||||| || || ||||| || || ||||| || ||||| Sbjct 230637 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq9661 Length=48700 Score = 89.7 bits (98), Expect = 4e-13 Identities = 164/239 (69%), Gaps = 1/239 (0%) Strand=Plus/Plus Query 14940 ACCATGTCTG-CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGT 14998 ||||| ||| ||||| |||| | | || || || |||||||| || ||||| |||| Sbjct 31580 ACCATCACTGGCCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGT 31639 Query 14999 TGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTT 15058 |||| ||| || ||| | || ||||| || |||||||| | || | |||||||| Sbjct 31640 TGTAGTCGGAAAGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTT 31699 Query 15059 GGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGC 15118 ||||| || || |||||||| || || || || ||| | || || ||||| Sbjct 31700 GGTCGGGAGGGATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCG 31759 Query 15119 TATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || ||||| || || || || ||||| || || || || || |||||| Sbjct 31760 AGGCCTCCACCTCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 31818 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || || || ||||| || || ||||| |||||||| ||| Sbjct 31819 CCACCACGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAA 31878 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| |||| || || || || ||||| | || | ||||||||||||| || Sbjct 31879 AGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGG 31938 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || |||||||| || ||| || || || | || || ||||| || || Sbjct 31939 ATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACC 31998 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || ||||||||||| || || ||||| || || || || || ||||| Sbjct 31999 TCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357313597130000