Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq9360 98.7 9e-16 seq1448 86.0 6e-12 >seq9360 Length=410125 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||| || | |||||||| || || || ||||| ||| | Sbjct 230816 CCACCCCGCAGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAC 230757 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| ||| || | ||| || ||||| |||| | ||||| ||||||||||| Sbjct 230756 AGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGG 230697 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||||| ||| | | |||| ||| || | ||| || Sbjct 230696 ATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACC 230637 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || ||||| ||||| || || ||||| |||||||| Sbjct 230636 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq1448 Length=175156 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 47148 GCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATG 47207 || || ||| ||| ||||| | ||||||||||| ||||| | || || | || Sbjct 97885 GCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTTTGCCTCAATTTTCTGGCTG 97826 Query 47208 AAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAA 47267 || | ||| | ||||| || || || |||||||||||||| ||||| | ||||| Sbjct 97825 AAGAAGCGAGGCCTCATGCCGGGTCTGACTTTTAGCAACGAGCTCATCTCCCGTGACGAG 97766 Query 47268 GGCCTGCACACCAACTTTGCCTGTCTCTACTACAA 47302 ||||||||||| |||||||||| ||| ||||| Sbjct 97765 GGCCTGCACACTGACTTTGCCTGCCTCATGTACAA 97731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475393812320000