Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq2224 181 3e-41 >seq2224 Length=1872321 Score = 181 bits (200), Expect = 3e-41 Identities = 470/703 (67%), Gaps = 24/703 (3%) Strand=Plus/Plus Query 8418 CGACGGTATGCATGGCGGTGAGTTGATTATCGTCGGCGGAC-GGCCGTCGATGGGAAAGA 8476 || |||| |||| ||||| || | || ||| | ||||| | |||| || ||||| |||| Sbjct 1509043 CGCCGGTCTGCAAGGCGGCGACCTCATCATCTT-GGCGGCCCGGCCTTCCATGGGTAAGA 1509101 Query 8477 CCTCCCTCGCAATGAATATCGCAGAGCATGTCGCCATCGTGTCGAGAT--TGCCCGTCGG 8534 | | | || | |||||||| ||| | || || | | |||| |||| || | Sbjct 1509102 CGGCTTTTGCGCTCAATATCGCCGAGAACGTGGCGGT--TTCCGAGGGCCTGCCGGTGGT 1509159 Query 8535 CGTCTTGTCGCTGGAAATGCCGACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATC 8594 ||||| || |||||||| || |||||| || |||| ||| | | ||| Sbjct 1509160 GGTCTTCTCCATGGAAATGGGCGCCTCGCAGTTGGCCCTGCGTATGGTCGGCTCGCTGGG 1509219 Query 8595 CCGTATCAGCCAAAACAGGCT-GCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCC 8653 ||| ||| ||| | |||| ||| ||||| ||| | |||||||||||||| |||| Sbjct 1509220 CCGCATCGACCAGT-CGGGCTTGCGCACCGGGCGCTTGAAGGATGACGACTGGGGCCGCC 1509278 Query 8654 TGACGCGTGGC-GTCGAGCTGATGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCGCG 8712 |||| || ||| ||||| | || || | || | || ||| ||| | |||| Sbjct 1509279 TGAC-CGAGGCCGTCGATAAGCTGTCCAAGGCCTCGGTCTTCATTGACGAGACGCCCGCC 1509337 Query 8713 ATCACCCCGTCGAAATT-CAAGTCCGAGTTGCGGCGCTTGTATCGCGAATGCGGCCGGCT 8771 | | |||| | | || | | ||| | || ||| ||| |||||||| ||| Sbjct 1509338 CTGAACCCGGCCGAGTTGCGCGCCCGCGCC-CGCCGCCAAGCGCGCCAATGCGGCAAGCT 1509396 Query 8772 CGGGATGATTGTCGTTGACTACCTGCAGCTGATG------TCGGGTGACGGCGGCGGATC 8825 || |||| ||| | |||||| |||| |||||| || ||| | ||| || Sbjct 1509397 GGGCCTGATCGTCATCGACTACTTGCAACTGATGAGCGGCTCCGGTAGCAGCGCTGG--- 1509453 Query 8826 TGAAATGCGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGA 8885 ||| | || || |||||| | | || || || || | || ||| | || ||||| Sbjct 1509454 TGAGAACCGTGCGACCGAGATTTCTGAGATTTCACGGGGCCTGAAAGCCCTGGCCAAGGA 1509513 Query 8886 ACTCGACGTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAA 8945 | || || | || |||||||| ||||| || ||| | | || | ||| || | Sbjct 1509514 GTTGAACTGCCCTGTGATTGCGCTGTCTCAGCTCAACCGAAGTGTTGAAACTCGGCCTGA 1509573 Query 8946 CAAGCGGCCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGT 9005 |||||||||| | ||| ||| ||||| |||||||| || ||||||||||| || ||||| Sbjct 1509574 CAAGCGGCCCATGATGAGCGACCTGCGGGAGTCGGGCGCTATCGAGCAGGACGCGGACGT 1509633 Query 9006 GATCCTCTTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGC---AGATCGCGGTAC 9062 |||| | || ||||| |||||||| ||| |||| ||| | | | || | || || Sbjct 1509634 GATCATGTTCATCTATCGCGATGACTACTACAACCGCGAGAACTCCAAAGTGCCGGGCAC 1509693 Query 9063 GGCCGAAATCATCATTGCGAAGCAGCGAAACGGGCCGATTGGC 9105 ||||||||||||||| | |||||||| ||||| ||| | ||| Sbjct 1509694 GGCCGAAATCATCATCGGCAAGCAGCGTAACGGCCCGGTGGGC 1509736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127518337128000