Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq14944 114 2e-20 seq10358 109 7e-19 seq1448 109 7e-19 seq15668 86.0 8e-12 >seq14944 Length=2286 Score = 114 bits (126), Expect = 2e-20 Identities = 251/369 (68%), Gaps = 8/369 (2%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||| || |||||||| || | |||| ||| ||||| || |||||| || ||| Sbjct 718 CGGTCAAATCGGCCTGGGCGCAGCAAGGCGGGGTCCAGGATGTCCGGGCGGTTGGTGGCC 659 Query 12762 GCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || || || | || || | | | || ||||| |||||||| || | || ||| Sbjct 658 GCCATCACGATGACACCGAGGTTGGTCTCAAAGCCGTCCATCTCGACCAGCATCTGGTTG 599 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGTTGCTTACCGA 12879 | ||| || || || || ||||| | | ||| || |||| || || ||||| Sbjct 598 AGGGTCTGCTCGCGCTCGTCATTGCCA--CCGCCCAGGCCAGCACCACGATGGCGACCGA 541 Query 12880 CGGCGTCAATTTCGTCAATGAAAACGATACACGGTT-GATTTTCACGGGCAACTTCAAAG 12938 | ||||| |||||||||||||| | ||| || ||| | | ||| || || | || Sbjct 540 CAGCGTCGATTTCGTCAATGAAGATGATGCAGGGTGCGCTCTTCTTGGCTTGCT-CGAAC 482 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 || || ||||| | || || || || |||||||||||||| || | | | | || Sbjct 481 ATGTCGCGCACACGGGCTGCGCCCACGCCAACAAACATCTCCACGAAGTCAGAGCCCGAG 422 Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 || | || ||| || || |||| |||||||||||| || ||| | |||||||| || Sbjct 421 -ATGGTGAAGAAAGGCACCTTGGCTTCACCCGCGATAGCCTTGGCCAACAGGGTCTTACC 363 Query 13058 CGTCCCTGG 13066 ||| || || Sbjct 362 CGTGCCGGG 354 >seq10358 Length=34033 Score = 109 bits (120), Expect = 7e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| ||||| |||||||| || || ||| |||||| Sbjct 111 GCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGTTGCTGAAAGTCAGACCC 170 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| || |||||||||| ||||||||||| | ||| || || |||||||| ||| Sbjct 171 GGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAGATCCCGAGAAGAAAATC 230 Query 127640 CCCTCCAC 127647 |||||||| Sbjct 231 CCCTCCAC 238 >seq1448 Length=175156 Score = 109 bits (120), Expect = 7e-19 Identities = 103/129 (80%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATT-CGAGAAGCACAGACC 127578 ||||| || ||| || |||||||||||||||||||| || || | | ||| |||||| Sbjct 97746 GCAAAGTCAGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGCTAAAAG-TCAGACC 97804 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 |||||||| || |||||||||| ||||||||| | ||| || || |||||||| || Sbjct 97805 CGGCATGAGGCCTCGCTTCTTCAGCCAGAAAATTGAGGCAAAAGAACCCGAGAAGAAAAT 97864 Query 127639 CCCCTCCAC 127647 ||||||||| Sbjct 97865 CCCCTCCAC 97873 >seq15668 Length=647317 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||| ||| ||||||| | ||||| || ||||||||| || | ||| || || ||||| Sbjct 300922 TAGATATTGCTCGTGTAGGCCTCAATGCTCTCATTGTTGCCGAGGATCTGAGCAGTGGAA 300981 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCG 115997 || ||||||||||| |||| || |||||||| || Sbjct 300982 GCAGTGGGCATGGGCGCCAGCAGGAGGCTGTTACG 301016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613369160880000