Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1448 118 2e-21 seq10358 105 1e-17 seq15668 95.1 2e-14 >seq1448 Length=175156 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 ||| |||||| |||||||| |||||| |||||||| || ||||||| ||||||| | Sbjct 97735 ACATGAGGCAGGCAAAGTCAGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTGCTAA 97794 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | || |||||||||| || ||| || ||||| ||||| | ||||||| ||| Sbjct 97795 AAGTCAGACCCGGCATGAGGCCTCGCTTCTTCAGCCAGAAAATTGAGGCAAAAGAACCCG 97854 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || || |||||||||||||| ||||||||||| | ||||| Sbjct 97855 AGAAGAAAATCCCCTCCACGGCGGCAAACGCCACTATTCTCTC 97897 >seq10358 Length=34033 Score = 105 bits (116), Expect = 1e-17 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 159915 ACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACA 159974 ||| |||||| |||||||| |||||| ||||| || || ||||||| ||||||| | Sbjct 100 ACATGAGGCAGGCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGTTGCTGA 159 Query 159975 TGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGC 160034 | || |||||||||| || ||| || ||||| ||||| | ||||||| || Sbjct 160 AAGTCAGACCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAGATCCCG 219 Query 160035 TAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || || ||||||||||| || ||||||||||| | ||||| Sbjct 220 AGAAGAAAATCCCCTCCACTGCGGCAAACGCCACTATTCTCTC 262 >seq15668 Length=647317 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 203929 GTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCT 203988 |||||| |||| |||||||| ||||| || || ||||| |||||||| |||||||| Sbjct 300047 GTGCATAGAAGTCAGTTTGCCGTAGTTGGCCTCTGCGATGTGGATGTTCAGGGACTGGCT 300106 Query 203989 TTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGGTCTTCTGCGAAATCTC 204048 ||||||||||||| | || || || ||||| | | | | ||||| |||||||| Sbjct 300107 CTGGTCGATGAAAGCACCGCGGTCGGCTGCCATCTGAAGGACGACTTTCTGGGAAATCTC 300166 Query 204049 CCACACCGTCTTGAACA 204065 ||| || || ||| ||| Sbjct 300167 CCATACGGTTTTGTACA 300183 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794976290080000