Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq9661 123 6e-23 seq10870 102 2e-16 seq15668 86.0 1e-11 >seq9661 Length=48700 Score = 123 bits (136), Expect = 6e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || ||||||||||||| ||||||||| | | || Sbjct 31825 CGCAGACGCAGTACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTT 31884 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || |||| |||||| || || |||||||||||||| ||||| ||| || ||| Sbjct 31885 CGACCGTCCTCCAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCT 31944 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||||||| |||| ||| || | | || || ||||| Sbjct 31945 TCCTTATCTTGAATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAG 32004 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || || || ||||| || || || Sbjct 32005 GTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 32042 Score = 114 bits (126), Expect = 3e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | |||||| || ||||||||||||| ||||||||| | | || Sbjct 31597 CGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTT 31656 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || | |||||| || || ||||| |||||||| ||||| ||| || ||| Sbjct 31657 CGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCT 31716 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| |||||| |||| ||| || | | || || ||||| Sbjct 31717 TCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAG 31776 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || ||||| || || || Sbjct 31777 GTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTG 31814 >seq10870 Length=359794 Score = 102 bits (112), Expect = 2e-16 Identities = 120/160 (75%), Gaps = 2/160 (1%) Strand=Plus/Minus Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 ||| ||||||||||| |||||||| |||||||| || | ||| ||||| || ||| || Sbjct 75545 CCTGCCATCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACC 75486 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTC-ACGGATTCGACGGTGTCTGTTGTTTCTACATCCA 199586 ||| |||||||| |||||||| || ||| | ||||| | | || || || | Sbjct 75485 TTCCTTGTCCTGAAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAA 75427 Query 199587 ACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||||||||| |||||||| || || Sbjct 75426 GGGTGATGGTCTTCCCCGTGAGAGTCTTCACAAAGATCTG 75387 >seq15668 Length=647317 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 199472 CCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCT 199531 |||||||| |||||||| || || ||||| | | ||| ||||| ||| ||| || ||| Sbjct 380325 CCATCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCT 380266 Query 199532 CGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTG 199591 || ||||| || || || ||| | | ||| | | ||| || |||||||| Sbjct 380265 TTGTCTTGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTA 380206 Query 199592 ATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || ||||| || ||||||||||||||||| || || Sbjct 380205 ATTGTCTTCCCAGTGAGAGTTTTCACAAAGATCTG 380171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178649711206000