Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq9661 102 9e-17 seq9360 93.3 5e-14 >seq9661 Length=48700 Score = 102 bits (112), Expect = 9e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| |||| || | ||| |||||||||||| ||||||||||| || || || | Sbjct 31602 ACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGGCC 31661 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||| || || || | ||||| ||||||| || | || ||||| Sbjct 31662 ATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGGGATGCCTTCCTT 31721 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || ||||||| ||| | || | | || || | ||||| |||| ||||| Sbjct 31722 ATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCACCTCCAAGGTGAT 31781 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| ||||| || || || ||||| ||||| Sbjct 31782 AGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 Score = 96.9 bits (106), Expect = 4e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||||||||| || || || |||| || | |||||| || || || Sbjct 31854 CTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTCCAACTGCTTACCAGCAAA 31913 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||| ||||||| || | || ||||| || |||||| ||| | | Sbjct 31914 GATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTGAATCTTCGCCTTCACGTT 31973 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || | ||||| |||| || ||||| ||||| ||||| || || || Sbjct 31974 CTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTCTTGCCAGTCAGGGTCTTCAC 32033 Query 46582 AAAGATTTGCATT 46594 ||||| |||||| Sbjct 32034 GAAGATCTGCATT 32046 >seq9360 Length=410125 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||| | ||||| || | ||| |||||| ||||| ||||||||||| || ||||| | Sbjct 230805 ACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACC 230746 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || || | ||||||||| || || || | ||||| || |||| || | | ||||| Sbjct 230745 ATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTT 230686 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || || || ||| | || | | || ||| | ||||| |||| ||||| Sbjct 230685 ATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGAT 230626 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| ||||| || || |||||||| ||||| Sbjct 230625 GGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565111221360000