Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9360 123 2e-23 seq9661 122 9e-23 seq1448 118 1e-21 seq10358 109 5e-19 >seq9360 Length=410125 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || || || ||||| |||||||| | || || |||||| || Sbjct 230590 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCC 230649 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||||| | || || || ||||| || |||| || Sbjct 230650 GATACCATCGAGAACG-TGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCCGATCA 230708 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| || || | || ||||| ||| |||| || | |||||||| ||||||||| Sbjct 230709 ACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAA 230768 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||| ||||| | || || || |||||||| ||| || | || |||| Sbjct 230769 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTACGTCTGCGGGGTGGCC 230818 >seq9661 Length=48700 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || || || ||||| ||||| ||| | || || |||||| | Sbjct 32046 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCTTGGAGGTGGAGGCCTC 31987 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | | |||| | || | || || | || || || || || || |||||| Sbjct 31986 TGATACCATCGAGAACG-TGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACC 31928 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 ||||||| ||||| | || || || ||| |||| |||| || ||||| |||||||| Sbjct 31927 AACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGAACCCTTTCCGACTACA 31868 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||||||| | || || || ||||| |||||| || | || || Sbjct 31867 ACATCCAAAAGGAGTCAACCCTCCACTTGGTACTGCGTCTGCGTGGTGG 31819 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || |||||| | || || |||||| | Sbjct 31817 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAGGTGGAGGCCTCG 31758 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | || |||| || || || || || || |||||||| Sbjct 31757 GATACCATCGAGAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCTCCCGACCAA 31698 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||| | || || | || ||||| |||||||||| Sbjct 31697 CAGCGTCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGCCGAACCCTTTCCGACTACAAC 31638 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 ||||||||||| | || || || ||||| |||||| || | || |||| Sbjct 31637 ATCCAAAAGGAGTCTACCCTCCACTTGGTACTGCGTCTGCGTGGTGGCC 31589 >seq1448 Length=175156 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| |||| | ||| |||||||| |||| ||||||||| | ||| ||||| |||||| Sbjct 97731 TTGTACATGAGGCAGGCAAAGTCAGTGTGCAGGCCCTCGTCACGGGAGATGAGCTCGTTG 97790 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 || ||||||| || ||||||||||| || || || ||||| || || | ||| ||| Sbjct 97791 CTAAAAGTCAGACCCGGCATGAGGCCTCGCTTCTTCAGCCAGAAAATTGAGGCAAAAGAA 97850 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||||| ||||| | ||||| ||||| || || ||||| Sbjct 97851 CCCGAGAAGAAAATCCCCTCCACGGCGGCAAACGCCAC 97888 Score = 89.7 bits (98), Expect = 5e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 133382 CCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATAC 133441 ||||| || ||| |||||||| || ||||| || || ||| ||||||| || ||||| Sbjct 101247 CCTTGCTCAAGTCAACCTCCTCAACTGTCCAGAAGGATGCCACGGCTTTCTTATACATCT 101306 Query 133442 TCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTCGCGCAACA 133501 | || || | || || || || | ||| ||||||||| ||||||| || |||| || Sbjct 101307 GGAAAATCTCGGGGTACTGGATTGGTAGAATAACAAACCGGTGGGGGTTCTCCCGCAGCA 101366 Query 133502 GCGGCTCCG 133510 ||||||||| Sbjct 101367 GCGGCTCCG 101375 >seq10358 Length=34033 Score = 109 bits (120), Expect = 5e-19 Identities = 119/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||| |||| | ||| |||||||| |||| |||||| || | || ||||| |||||| Sbjct 96 TTGTACATGAGGCAGGCAAAGTCAGTGTGCAGGCCCTCATCACGTGAGATGAGCTCGTTG 155 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 |||||||||| || |||||||||||||| || || ||||| || || | || ||| Sbjct 156 CTGAAAGTCAGACCCGGCATGAGGCCGCGCTTCTTCAGCCAGAAAATCGAAGCAAAAGAT 215 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCAC 133040 ||||| ||||| | ||||| || || || || ||||| Sbjct 216 CCCGAGAAGAAAATCCCCTCCACTGCGGCAAACGCCAC 253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500060261120000