Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_015251.1 Length=235229 Score E Sequences producing significant alignments: (Bits) Value seq11737 86.0 9e-12 seq1447 86.0 9e-12 >seq11737 Length=277544 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 113820 GGGGGATTAGCTCAGTTGGAATGAGCGACTGGTTTGCAACCAGTAGGTCATCGGTTCGAC 113879 ||||||||||||||| ||| ||||| ||| ||||| ||| |||||||||||||||| Sbjct 219575 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 219516 Query 113880 CCCGATATCCTCCACCAATT 113899 ||||||| |||||| |||| Sbjct 219515 TCCGATATTCTCCACGAATT 219496 >seq1447 Length=1029730 Score = 86.0 bits (94), Expect = 9e-12 Identities = 80/100 (80%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 112463 AATAAAAAGCTTTATGCGGGTGTAGCTCAGTTGGTAGAGCTTCTGATTTCCAATCAGAAT 112522 ||||||| | || ||||| ||||||| ||||||||||||| | |||||| | |||| Sbjct 558056 AATAAAA---TATAAGCGGGAATAGCTCAATTGGTAGAGCTTCAGCCTTCCAAGCTGAAT 558112 Query 112523 GTCGCGTGTTCGAGTCACGTTACCCGCTCCAAATTTGTAT 112562 || ||| ||||||||| |||| |||||| ||| ||| ||| Sbjct 558113 GTTGCGGGTTCGAGTCCCGTTTCCCGCT-CAATTTTTTAT 558151 Score = 86.0 bits (94), Expect = 9e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 113820 GGGGGATTAGCTCAGTTGGAATGAGCGACTGGTTTGCAACCAGTAGGTCATCGGTTCGAC 113879 ||||||||||||||| ||| ||||| ||| ||||| ||| |||||||||||||||| Sbjct 756798 GGGGGATTAGCTCAGCTGGCTAGAGCGCCTGCCTTGCACGCAGGAGGTCATCGGTTCGAC 756857 Query 113880 CCCGATATCCTCCACCAATT 113899 ||||||| |||||| |||| Sbjct 756858 TCCGATATTCTCCACGAATT 756877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 752435463920000