Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq1447 129 7e-25 >seq1447 Length=1029730 Score = 129 bits (142), Expect = 7e-25 Identities = 339/514 (66%), Gaps = 10/514 (2%) Strand=Plus/Minus Query 159280 ACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCAGGA 159339 || |||||| || | | ||| | ||||||||| |||| | || || |||||||| || Sbjct 592616 ACTGGGTTTTATGCAACTTCACTTCAACCTAACTCAGGCGCTCAAGGAGAGTATGCTGGT 592557 Query 159340 CTGTTAGCAATCCAAGCATACCATCAAGG-ATCAGGAGATGATAAAAGAAATGTATGTTT 159398 ||| | | || || ||||| || | | || | || | | ||||| | ||| Sbjct 592556 CTGATGGTGATTTCTGCCTACCACAAAACCAACGGGCAAGGACATA-GAAATATTGCTTT 592498 Query 159399 GATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAAGT 159458 ||| || | || || || ||||| ||||| || |||||||| | || || ||||| || Sbjct 592497 GATGCCTGCTTCTGCGCACGGAACCAATCCAGCTTCAGCAGTACTTGCTGGAATGAAGGT 592438 Query 159459 TGTAGGTGTCAAGTGTGATGATGATGGCAACATAGACATCAAAGATCTAGAGAAGAAAG- 159517 ||| | || || || | || |||| || | |||| || | | || | Sbjct 592437 TGTCGTAGTAAAAAACCTAGAAAACGGACACATCGATCTGGAAGACTTAAAAGAAAAGGT 592378 Query 159518 ---CAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCTACACATG 159574 | | | || ||| || | || ||| | ||| |||| |||||||| || ||| Sbjct 592377 TGCCCAGTACAAAGACAATTTAGCT----TGTTTGATGGTTACTTATCCATCGACTTATG 592322 Query 159575 GTGTATTTGAAACAAACATCAGACAGATATGTAAGATTGTTCATGAGAATGGTGGTCAGG 159634 |||| ||||| | | || | | | || | | |||| | ||||| || |||| Sbjct 592321 GTGTTTTTGATGAAGAAATTAAAGAAGTAACCGAACTCATTCACCAAAATGGAGGACAGG 592262 Query 159635 TATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATGTGACTATG 159694 | ||| | || || || || | ||||| || ||||| || | || || || || Sbjct 592261 TTTATATGGACGGCGCCAACATGAATGCCCAAGTAGGCCTTACCAATCCTGCCAACATTG 592202 Query 159695 GTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGGAG 159754 | |||||||| ||||| |||||||| || || || || ||||| ||||||||||||| Sbjct 592201 GGGCAGATGTTTGTCACCTAAACTTGCACAAAACCTTTGCGATTCCTCATGGAGGTGGAG 592142 Query 159755 GTCCTGGCGTAGGTCCTATTGGTGTAGCAAAACA 159788 |||| || || ||||||||| |||| || ||||| Sbjct 592141 GTCCAGGAGTTGGTCCTATTTGTGTTGCCAAACA 592108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587918888480000