Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq10870 129 1e-24 seq9360 125 2e-23 seq15668 118 2e-21 >seq10870 Length=359794 Score = 129 bits (142), Expect = 1e-24 Identities = 125/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 194980 CTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCT 195039 || |||||||| || ||||| || ||||||||||||| |||||||| || ||||| ||| Sbjct 75544 CTGCCATCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACCT 75485 Query 195040 TCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGG 195099 || ||||| ||||||||| ||||| || ||||| ||||| ||| ||||| |||||| Sbjct 75484 TCCTTGTCCTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAGG 75425 Query 195100 GTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | ||| || || || | ||||| Sbjct 75424 GTGATGGTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 >seq9360 Length=410125 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| || || ||||| || || || ||||| |||| || || | |||||||| | ||| Sbjct 230793 GTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGACCATCTTCCAACTG 230734 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| || ||||| || ||||| || ||||| || ||||||||||| Sbjct 230733 CTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGGGATTCCTTCCTTATCTTGAATTTT 230674 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| |||||||| ||||| || || ||||| || || || | ||||| || || Sbjct 230673 GGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCACCTCCAGAGTGATGGTCTTGCCAGT 230614 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 230613 CAGGGTCTTCACAAAGATCTGCAT 230590 >seq15668 Length=647317 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 |||||||| |||||||| || || ||||| | || |||||||| ||||||||||| ||| Sbjct 380325 CCATCTTCAAGCTGCTTGCCAGCAAAGATTAATCTCTGTTGGTCAGGAGGAATGCCCTCT 380266 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 |||||||||||||| || || || ||||| | ||| ||| ||| ||||| | ||| Sbjct 380265 TTGTCTTGAATTTTAGATTTAACATTTTCAATTGAGTCAGAAGCTTCAACTTCCAACGTA 380206 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| || || | ||||| Sbjct 380205 ATTGTCTTCCCAGTGAGAGTTTTCACAAAGATCTGCAT 380168 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109225725806000