Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq16236 141 8e-29 seq9774 132 4e-26 >seq16236 Length=166078 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || |||||||| ||||| |||||| | ||||| |||| ||||||||||||||||| || Sbjct 14955 AGGCCGGTGACCTGAGCGATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGC 14896 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| |||||||| | || | |||||| |||||||| || ||||| || | | Sbjct 14895 ACACCGAGGCCCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAGCTCGCCATTGGCA 14836 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 |||||||||||||||| | ||||| ||||| || ||||| Sbjct 14835 ACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCAT 14795 >seq9774 Length=82367 Score = 132 bits (146), Expect = 4e-26 Identities = 126/161 (78%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || |||||||| ||||| |||||| | ||||| |||| ||||||||||||||||| || Sbjct 80903 AGGCCGGTGACCTGAGCAATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGC 80962 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| | |||||| | || | |||||| |||||||| || | ||| || | | Sbjct 80963 ACGCCGAGGCTCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAACTCGCCATTGGCA 81022 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCAT 30029 |||||||||||||||| | ||||| ||||| || ||||| Sbjct 81023 ACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCAT 81063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408527959514000