Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq1 91.5 5e-14 >seq1 Length=2207822 Score = 91.5 bits (100), Expect = 5e-14 Identities = 199/295 (67%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 25978 ACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTC---CCACTTGCGGGTTTTCAGT 26034 || ||||| ||||||||||| || |||||| || || |||||| ||||| ||||| Sbjct 253497 ACGATTTCGGTGGTGTAGCGGTCGTTGCCGTCTTTGTCCTGCCACTTACGGGTCTTCAGG 253438 Query 26035 TGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACC 26094 | ||||| || || ||| | || ||||| ||||| ||||| |||||||| ||| Sbjct 253437 CGGCCCTCGATATAGACCGGGCGGCCCTTCTTGAGGTATTCGCCTGCGATCTCGGCTTGG 253378 Query 26095 TTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCT-GCTT 26153 | || ||| || || ||||||||| || |||||| |||||| | | || Sbjct 253377 CGGTCATACATGACCACCGAATGCCATTCGGTTTCTTCTTGGCGCTCGCCGCTGTCGCGG 253318 Query 26154 ATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCAT 26213 || |||||| | | ||| || | | | ||| || || |||| || || | Sbjct 253317 CTC-TTCCAGTTACGGGTGGTGGCAATGCGCAGATTGCACACGGCTGCGCCGTTGGGGGT 253259 Query 26214 GTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACG 26268 ||| || | || || ||| ||||||||| |||| | ||| ||||| || ||| Sbjct 253258 GTAGCGCACTTCGGGGTCGCGCCCCAGGTTGCCGAGGATGATGACTTTGTTGACG 253204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159783438988000