Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_018282.1 Length=61167 Score E Sequences producing significant alignments: (Bits) Value seq1 116 1e-21 >seq1 Length=2207822 Score = 116 bits (128), Expect = 1e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 6575 CGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGT 6634 ||||||||||||||||||| |||||||||| |||| || || ||||| ||||| Sbjct 722704 CGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGGCGT 722763 Query 6635 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 6694 ||||||| | ||| ||||||| ||||||||| | |||||||| ||| | || Sbjct 722764 GCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTCTGC 722823 Query 6695 CACCAACCCCTGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTGTCTCCTGGGCTC 6751 ||||||||| || | ||||| || || || ||||| ||| ||| ||||||||| Sbjct 722824 CACCAACCCTTGTGCGGAGCAGCCGCTGCCTCCCTATGGTTGCTGCTGCCTGGGCTC 722880 Score = 116 bits (128), Expect = 1e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 6575 CGCCCGGGCGCTGTGGGACGCGATCATGCGCGGGACCTGGGATTGGGCGGAGCCGGGCGT 6634 ||||||||||||||||||| |||||||||| |||| || || ||||| ||||| Sbjct 725239 CGCCCGGGCGCTGTGGGACCAGATCATGCGCTCCACCTACGACCATGCCGAGCCCGGCGT 725298 Query 6635 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 6694 ||||||| | ||| ||||||| ||||||||| | |||||||| ||| | || Sbjct 725299 GCTGTTCTTGGACCGCATCAACCAAGACAACAACCTCAGCTACTGCGAAGACATTTCTGC 725358 Query 6695 CACCAACCCCTGCGGTGAGCAACCCCTCCCGCCCTACGGTGCCTGTCTCCTGGGCTC 6751 ||||||||| || | ||||| || || || ||||| ||| ||| ||||||||| Sbjct 725359 CACCAACCCTTGTGCGGAGCAGCCGCTGCCTCCCTATGGTTGCTGCTGCCTGGGCTC 725415 Score = 82.4 bits (90), Expect = 3e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 6129 GAAGCCGCAGCCACAATGCGGATGGGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGT 6188 || ||||| | || |||||| ||||| || ||||||| || || || |||| Sbjct 722294 GAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATCCGC 722353 Query 6189 CCTCGCGGCGACCTGATCCGCAAGCTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATG 6248 || | |||| | | || || | |||||| | ||||||| || |||||| ||| Sbjct 722354 CCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTATATG 722413 Query 6249 CACATCTTCGACGCGATCT-GCAAGTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCA 6307 | | || ||| || ||| | || || | ||| ||||| ||||| || || || Sbjct 722414 CGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGAGTCCGCCGGCGCGCGCCGTGGCGCGCA 722472 Query 6308 GATGGGGGTGATGCGCGTGGACCATCCCGACATTGAGGAGTTCATTCACGCCAA 6361 ||||||||| |||| |||||||||||||| |||| ||||| |||||||| Sbjct 722473 AATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCAA 722526 Score = 82.4 bits (90), Expect = 3e-11 Identities = 160/234 (68%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 6129 GAAGCCGCAGCCACAATGCGGATGGGCGGCGGGATCGGCTATGACTTCAGCACCCTCCGT 6188 || ||||| | || |||||| ||||| || ||||||| || || || |||| Sbjct 724829 GAGGCCGCCGAGACCATGCGGCGTGGCGGTGGCGTCGGCTACGATTTTTCCAAGATCCGC 724888 Query 6189 CCTCGCGGCGACCTGATCCGCAAGCTCCAGTCCCACTCCTCCGGCCCCATCAGCTTCATG 6248 || | |||| | | || || | |||||| | ||||||| || |||||| ||| Sbjct 724889 CCGCAGGGCGCCTGGGTCGGCTCGACGCAGTCCAGCGCCTCCGGGCCGGTCAGCTATATG 724948 Query 6249 CACATCTTCGACGCGATCT-GCAAGTGCGTCGCCTCCTCCGGCCATCGCCGCGGAGCCCA 6307 | | || ||| || ||| | || || | ||| ||||| ||||| || || || Sbjct 724949 CGGGTGTTTGAC-CGCTCTTGTGAGACGGTGGAGTCCGCCGGCGCGCGCCGTGGCGCGCA 725007 Query 6308 GATGGGGGTGATGCGCGTGGACCATCCCGACATTGAGGAGTTCATTCACGCCAA 6361 ||||||||| |||| |||||||||||||| |||| ||||| |||||||| Sbjct 725008 AATGGGGGTGCTGCGTTGCGACCATCCCGACATCGAGGCCTTCATCCACGCCAA 725061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 195570987764000