Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq2224 389 5e-103 >seq2224 Length=1872321 Score = 389 bits (430), Expect = 5e-103 Identities = 723/1043 (69%), Gaps = 35/1043 (3%) Strand=Plus/Plus Query 136640 TGGCCTAGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCT 136699 || |||| ||||||||||| | || |||||||| || || || | ||||| | ||||| Sbjct 868983 TGTCCTACCCCTTCACGCACACCACCTGCTTGAGTGTATGCACCACCTCCACCAAGTCCT 869042 Query 136700 TCTGGGCCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGC 136759 ||| ||| |||| |||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 869043 GCTGCGCCGCCATCACCGCGTCGATGTCTTTGTAGGCCATGGGGATTTCGTCGATCACGG 869102 Query 136760 CAGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAGG 136819 | |||| |||||||| ||||| || | ||||| | ||| ||||| |||| |||||| Sbjct 869103 CTTCGTCTTTGCGGCATTCCACACCGGCCGTGGCTTGGATGTGGTCGTCCACGGTGAACA 869162 Query 136820 TCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCA-CGAGCAGAAC 136878 || |||||||| ||| || |||| |||||||||||||| ||| | || || Sbjct 869163 TCTTCTTGGCCTTGGTGCGGCTCATCACGCGGCCCGCGCCGTGGCTGCAGCTCTCA-AAG 869221 Query 136879 GAGTCCGCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATG 136938 |||| |||||| |||||||||||||||| || ||||| ||| |||||| Sbjct 869222 CTTTCCGGGTTGCCCAGGCCGCGCACGATGTAGCTGCGCGCGCCCATGCTGCCCGGGATG 869281 Query 136939 ATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCG 136998 || || | || | |||||| || |||||||||||||||||||||||| || || Sbjct 869282 ATGCCCAGCTCGCCCTTCTTAGCGCTCACCGCGCCCTTGCGGGTCACGAACACGTCTTCA 869341 Query 136999 TCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTC 137058 | |||||| || | ||| || ||||||||||||||||||||||| || ||| || | Sbjct 869342 CCAAAGTGGCGCTCTTGCTGCACATAGTTGTGGTGGCAGTTCACCGCCTCGATGTGCGAC 869401 Query 137059 TTGAACG----GCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCAT 137114 | |||| | | | || | ||| || ||| | | || | ||||||||| Sbjct 869402 TCAAACGGTTTGGTGATGACCTGTCGCACG-GTGG---CAATGAGGTTGGCCATCATCAC 869457 Query 137115 CTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAA 137174 |||||||| | |||| || | ||| |||| | || || ||| |||||| || Sbjct 869458 TTCGCGGTTACGCTGCGCAAACTTCTGCGCCCAACCCACCGCGCGCACATAGTCGCCAAA 869517 Query 137175 CTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACG 137234 | | || | || || || | || | ||| | || || | ||||| || || Sbjct 869518 GTACTGCGCCCCCTCTTCGAAGTAGGCCAAGTCTTCATCGGGCAGGTTGCGTTGGTTGCG 869577 Query 137235 ACGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCG-GCCGATGGTGTTGCCGACGC 137293 | | || || || ||||||| ||||||||| ||| | |||||||| ||||| || | Sbjct 869578 -CTCGGCGTC--CTTCTTGGCCAGCTCGATGAA-ATGGGTGCCGATGGCATTGCCCACCC 869633 Query 137294 CGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGA 137353 | ||||| || ||||| ||||| | ||| || | | |||||| |||||||| |||| Sbjct 869634 CACGCGAACCGGAGTGCAGCATGAACCACACCGCCCCTTGCTCGTCCAGGCAGACTTCGA 869693 Query 137354 TGAAGTGGTTGCCGCCGCCCAGGGTGCCCAGTTGGACCACGCTGTTGGCGTTCTTCAGCG 137413 |||||||||| || |||| |||||||| || | |||||| ||||||||| Sbjct 869694 TGAAGTGGTTACCCGTCCCCAAAGTGCCCAGGTGTTTGCGGTTGTTGGTGTTCTTCAGGC 869753 Query 137414 CCGGGTACTTCTCGCAGAGCTTGTCGAACCGCGCCTCCA----GGCCCGAATC-GACCCA 137468 ||||| | |||||| ||| ||||||| | ||| ||||| ||| | ||| Sbjct 869754 GCGGGTGCAGCTCGCACAGCGCGTCGAACTCATCAGCCAGCGTGGCCCAGATCTGGTCCA 869813 Query 137469 CTTGCGCAGGATCGAGTTGGGGATGCC-GCTGCGCCCGTTCCAGCCGCCCGACGGACCCG 137527 | | ||| || || | || ||||| || | || ||| |||| | || Sbjct 869814 ------CCGTGTCGGGTGGGTTCTCCCAGCTGCCGGGGTCACGGC--CCCCACGG-CGCG 869864 Query 137528 GC---CCGCCGTGCGGGACGGCGTGCTCGATCAGCGAGCGAAGCTTGGAC-AGGCTGTCG 137583 || ||||||||| ||||| | ||| || || || || | || | | | ||||| Sbjct 869865 GCGAGAAGCCGTGCGGCACGGCCTTCTCAATGGCCGCACGCAG-TGGGCCTAAGTTGTCG 869923 Query 137584 GGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACG 137643 || ||||| ||| || | |||| | |||||||||| |||||||| ||||| || Sbjct 869924 GGCAGGTCTTCAGCGCGCAAGGTGGTCTTGGCCGCCATCATTCCGCAGCCAATGTCTACT 869983 Query 137644 CCGACGGCGGCCGGGATGATCGC 137666 || || || ||||||||||| || Sbjct 869984 CCCACCGCCGCCGGGATGATGGC 870006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689988717600000